Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332C05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0178 + 17594062-17595576 30 0.98
03_04_0007 + 16265360-16266982 30 1.3
10_07_0084 + 12748685-12749146 29 2.3
08_02_1382 + 26565137-26565210,26565330-26565468,26565489-265656... 29 2.3
03_03_0208 + 15459260-15459922 29 3.0
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 28 5.2
10_08_0353 - 17101261-17102244 28 5.2
06_03_0002 - 15280292-15281550,15282714-15282840 28 5.2
03_05_0267 - 22538631-22539452 28 5.2
09_04_0215 - 15716832-15717699,15717809-15717938,15718038-15718173 27 6.9
01_01_1045 - 8233895-8234632 27 6.9
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 27 9.1
11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680 27 9.1
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 27 9.1
05_05_0012 - 21505108-21505150,21505545-21505903 27 9.1
04_04_0910 - 29321128-29321276,29321977-29322508,29323301-293237... 27 9.1
03_05_1032 - 29861859-29862011,29862347-29862470,29862557-298627... 27 9.1
02_01_0302 - 2021221-2023305 27 9.1
01_01_0889 + 7008077-7009261 27 9.1
>06_03_0178 + 17594062-17595576
Length = 504
Score = 30.3 bits (65), Expect = 0.98
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 191 GEKPRHASPRRGGSAPRPTPGAPPRSRGALAAKRL 87
G PRH SP S PRP+ P + + +A L
Sbjct: 6 GHSPRHLSPSPAPSTPRPSSPTPSSASASASASAL 40
>03_04_0007 + 16265360-16266982
Length = 540
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -1
Query: 197 TVGEKPRHASPRRGGSAPRPTPGAPPR 117
TV P S RR GSAP P+ AP R
Sbjct: 328 TVASNPDPVSIRRSGSAPEPSEEAPAR 354
>10_07_0084 + 12748685-12749146
Length = 153
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 200 QTVGEKPRHASPRRGG--SAPRPTPGAPPRSRGALAAKR 90
Q+ G K A+ RR G +AP P APP R A A+ R
Sbjct: 34 QSAGRKQPSATSRRPGEAAAPPPEKKAPPLLRAAKASSR 72
>08_02_1382 +
26565137-26565210,26565330-26565468,26565489-26565603,
26565761-26565828,26565907-26566551,26566927-26567031,
26567115-26567465
Length = 498
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 206 IRQTVGEKPRHASPRRGGSAPRPTPGAPPRSRGALAAKRLCNFIF 72
+R +GE+ GG PR PG RS G + R F++
Sbjct: 445 VRAEIGEQVLFVREDAGGGEPRSPPGRDRRSLGNMIRSRSEKFLY 489
>03_03_0208 + 15459260-15459922
Length = 220
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 70 KNIKLQRRLAASAPRDRGGAPGVGRGADPPRRGLA---CRGFSP 192
K ++ R AA+A D GGA G RG PPR L+ CR SP
Sbjct: 142 KQDEVVARPAAAAGADGGGA-GEDRGHPPPRERLSSAPCREASP 184
>11_01_0315 -
2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 100 ASAPRDRGGAPGVGRGADPPRRGLACRGFSPT 195
AS+PR R G GR +PPR + RGF P+
Sbjct: 447 ASSPRGRRRIEGSGRRIEPPRPP-SHRGFRPS 477
>10_08_0353 - 17101261-17102244
Length = 327
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -3
Query: 180 AACKSAAGRVSATADAGG 127
A C +AAGR A ADAGG
Sbjct: 202 ARCVAAAGRAGAEADAGG 219
>06_03_0002 - 15280292-15281550,15282714-15282840
Length = 461
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 167 PRRGGSAPRPT--PGAPPRSRGALAAKRLCNFIF 72
PRRG +APR + P APP S+ L C F
Sbjct: 106 PRRGAAAPRASLHPPAPPHSQPNLNLCHCCGVRF 139
>03_05_0267 - 22538631-22539452
Length = 273
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 182 PRHASPRRGGSAPRPTPGAP 123
P +SP RG SA RPTP P
Sbjct: 201 PPSSSPSRGCSARRPTPSPP 220
>09_04_0215 - 15716832-15717699,15717809-15717938,15718038-15718173
Length = 377
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 191 GEKPRHASPRRGGSAPRPTPGAPPRSRGALAAKRL 87
G +PR A PR + P P A SR A+AA +
Sbjct: 121 GRRPRGAPPRLVLAGPGPAVTAAATSRNAMAASAI 155
>01_01_1045 - 8233895-8234632
Length = 245
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 158 GGSAPRPTPGAPPRSRGALAAKR 90
GGSAP PTP PR RG +R
Sbjct: 68 GGSAPTPTP--TPRGRGGRRVRR 88
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 70 KNIKLQRRLAASAPRDRGGAPGVGRGADPPRR 165
++ K+ R A +PR RG G GRG P +R
Sbjct: 121 RSSKMAVRSANISPRGRGRGRGRGRGRPPTKR 152
>11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680
Length = 612
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 231 NFQFIDRIY*TDSGRKAAACKSA-AGRVSATADAGG 127
N QFID Y AAA K A GR+S GG
Sbjct: 13 NLQFIDVAYRVKVSTTAAAAKGAPPGRISHAGGTGG 48
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 118 RGGAPGVGRGADPPRRGL 171
+GG G G G D PRRGL
Sbjct: 636 KGGGGGEGGGLDEPRRGL 653
>05_05_0012 - 21505108-21505150,21505545-21505903
Length = 133
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 118 RGGAPGVGRGADPPRRGL 171
RGGA G RG D RRG+
Sbjct: 95 RGGAQGASRGGDERRRGV 112
>04_04_0910 -
29321128-29321276,29321977-29322508,29323301-29323706,
29323933-29324028,29324563-29324645,29326620-29326732,
29327156-29327315
Length = 512
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 180 AACKSAAGRVSATADAGGSTSVPGCT 103
A CK + G + + G S+S+P CT
Sbjct: 416 AGCKGSDGSANGASGGGSSSSLPVCT 441
>03_05_1032 -
29861859-29862011,29862347-29862470,29862557-29862759,
29863081-29863199,29863489-29863623,29863695-29863950,
29864749-29864880,29865001-29865222
Length = 447
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 182 PRHASPRRGGSAPRPTPGAPPRSRGALAAKR 90
P+ +P G+AP P P A + G KR
Sbjct: 3 PQEPAPAANGAAPAPAPAAAAAAAGGKRRKR 33
>02_01_0302 - 2021221-2023305
Length = 694
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 170 SPRRGGSAPRPTPGAPPRSRG 108
SP RGG P +PPR RG
Sbjct: 392 SPGRGGQGPPAPVSSPPRRRG 412
>01_01_0889 + 7008077-7009261
Length = 394
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -1
Query: 185 KPRHASPRRGGS--APRPTPGAPPRSRGALAAKR 90
KP+ SP S AP P P PP +R + KR
Sbjct: 263 KPKKKSPSTASSKAAPPPPPPPPPTTRHQIRRKR 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,136,537
Number of Sequences: 37544
Number of extensions: 273049
Number of successful extensions: 1519
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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