Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332C05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical ...    32   0.22 
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    31   0.50 
Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z93396-4|CAB07713.1|  230|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z75552-4|CAA99942.1|  624|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z49126-4|CAD56565.1|  336|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen prot...    27   8.1  

>AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.2 protein.
          Length = 254

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -1

Query: 215 IVFIRQTVGEKPRHASPRRGGS----APRPTPGAPPRSRG 108
           + F  Q  G  P   +PR GGS    APRP P A PR+ G
Sbjct: 206 VCFFTQPRGGGPAPGAPRAGGSGAGGAPRPPPPAGPRAFG 245


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -1

Query: 182 PRHASPRRGGSAPRPTPGAPPRSRGALAAK 93
           PR  SPRRG S  R T  +PPR RG+  A+
Sbjct: 217 PRRGSPRRG-SPRRDTRRSPPRRRGSPPAR 245


>Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical
           protein F14D7.2 protein.
          Length = 457

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 200 QTVGEKPRHASPRRGGSAPRPTPGAPPRS 114
           +T    P H SPRR  SAP P+   PP S
Sbjct: 67  ETSSSSPEHRSPRRSKSAP-PSSSNPPAS 94


>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 195 SGRKAAACKSAAGRVSATADAGGSTSVPGC 106
           SG     CK +AG VSAT  A   +   GC
Sbjct: 224 SGSATTTCKCSAGDVSATTAASACSEKSGC 253


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 109  PRDRGGAPGVGRG-ADPPRRGLACRGFSP 192
            P  RGG PG GRG   P  RG + RG  P
Sbjct: 1503 PMFRGGPPGPGRGMPSPMMRGSSMRGGFP 1531


>Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical
           protein F32A7.5c protein.
          Length = 877

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 206 IRQTVGEKPRHASPRRGGSAPRPTPGAPPR 117
           ++ T   KP  A+P    ++P P P AP R
Sbjct: 351 VQGTAPSKPAPAAPASAATSPAPAPEAPRR 380


>Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical
           protein F32A7.5b protein.
          Length = 764

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 206 IRQTVGEKPRHASPRRGGSAPRPTPGAPPR 117
           ++ T   KP  A+P    ++P P P AP R
Sbjct: 351 VQGTAPSKPAPAAPASAATSPAPAPEAPRR 380


>Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical
           protein F32A7.5a protein.
          Length = 878

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 206 IRQTVGEKPRHASPRRGGSAPRPTPGAPPR 117
           ++ T   KP  A+P    ++P P P AP R
Sbjct: 351 VQGTAPSKPAPAAPASAATSPAPAPEAPRR 380


>Z93396-4|CAB07713.1|  230|Caenorhabditis elegans Hypothetical
           protein ZC15.6 protein.
          Length = 230

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
 Frame = -1

Query: 191 GEKPRHASP---RRGGSAPRPTPGAPPR 117
           G+  RH+S      GG  PRP PG P R
Sbjct: 20  GKGSRHSSSSSEEHGGHGPRPGPGGPGR 47


>Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical
           protein F14F7.1 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 158 GGSAPRPTPGAPPRSRGA 105
           GG+APRP P  P   RGA
Sbjct: 179 GGAAPRPGPPGPKGPRGA 196


>Z75552-4|CAA99942.1|  624|Caenorhabditis elegans Hypothetical
           protein W04D2.4 protein.
          Length = 624

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
 Frame = -2

Query: 478 VKFL*AQKSSLLAYPIQKLHLLRQHFV------IKVQNVCSVTSV*LKILTLS 338
           +K++ AQK    + P++ +  LR HF+      I  Q VC V +  LK L +S
Sbjct: 206 IKYIIAQKQMEQSSPMEIIGFLRHHFLSISADNIYAQRVCFVDTDELKTLLVS 258


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 215 IVFIRQTVGEKPRHASPRRGGSAPRPTPGAPPRSR 111
           ++  R  V  + R A P +  S+P  +P APPR R
Sbjct: 306 VIIYRDAVTRRSRSADPLQN-SSPTMSPIAPPRKR 339


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 215 IVFIRQTVGEKPRHASPRRGGSAPRPTPGAPPRSR 111
           ++  R  V  + R A P +  S+P  +P APPR R
Sbjct: 306 VIIYRDAVTRRSRSADPLQN-SSPTMSPIAPPRKR 339


>Z49126-4|CAD56565.1|  336|Caenorhabditis elegans Hypothetical
           protein DH11.5c protein.
          Length = 336

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +1

Query: 85  QRRLAASAPRDRG--GAPGVGRGADPPR 162
           Q+R +   P   G  GAPGVG+GA  PR
Sbjct: 27  QKRNSLQPPVSAGAVGAPGVGQGAGGPR 54


>AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical
           protein W07E6.2 protein.
          Length = 473

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +1

Query: 91  RLAASAPRDRGGAPGVGRGADPPRRGLACRGFSPTVCLINTIYELKIFNILKFTKWLIYV 270
           R +AS P    G P +     P  RGLA      T+ + +   EL +        W++ +
Sbjct: 96  RCSASIPGH--GEPVISAQFSPDGRGLASGSGDQTMRIWDIELELPLHTCKSHKSWVLCI 153

Query: 271 IWS 279
            WS
Sbjct: 154 AWS 156


>AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen protein
           102 protein.
          Length = 460

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 191 GEKPRHASPRRGGSAPRPTPGAPPRSRGA 105
           G +P  A+P    +AP   P A P + GA
Sbjct: 286 GAEPAGAAPEAAAAAPEAAPEAAPAAEGA 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,248,682
Number of Sequences: 27780
Number of extensions: 217147
Number of successful extensions: 823
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)