Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332C02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    27   2.2  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    27   2.2  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    26   3.9  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   5.2  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   6.8  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   9.0  

>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1188

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 237  SISKLMDSTKKFTVYETYRCMPLLGDER 320
            S  +L+D+  +  ++ETYRC+  +G  R
Sbjct: 962  SHEQLVDNDDEAAIFETYRCLKSMGLRR 989


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 389 YILAVYDILKNNMKILLNH*QNCH 460
           Y++   D++KN    ++ H QNCH
Sbjct: 756 YLVENLDLVKNGCSNMVKHIQNCH 779


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 225 CITRSISKLMDSTKKFTVYETYRC 296
           CIT+SI  + ++ KK    + Y+C
Sbjct: 99  CITKSIKTVRETLKKVKTIDLYQC 122


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 353 TLHNSVHMIFKTYILAVYDILKNNMKILLNH*QNCH 460
           T+H+S H   +  +   Y+ +KNN   L++     H
Sbjct: 380 TIHHSEHKFLREILYDYYEHVKNNPNTLISQFYGLH 415


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +3

Query: 207 NVTYAGCITRSISKLMDSTKKFTVYETYRCMPLLGDERATAPNWVIHIVHYTIV 368
           N + A  I   +S ++ S+    V + Y C+  + +   T+PN +  I+   ++
Sbjct: 537 NASAAEEIIPLLSNILQSSDTIVVSKAYSCLETIIESLKTSPNIIETIISEDLI 590


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 152 IFTHQTAASLQYVCFRF 102
           I++HQ A SL YV +RF
Sbjct: 685 IYSHQYADSLSYVDYRF 701


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,230
Number of Sequences: 5004
Number of extensions: 43943
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)