Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332C02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067616-10|AAC19189.2|  668|Caenorhabditis elegans Abnormal dau...    29   2.7  
Z50006-5|CAA90300.1|  301|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF003145-7|AAB57714.2|  352|Caenorhabditis elegans Serpentine re...    28   4.7  
Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical pr...    27   8.1  
M32877-1|AAA28001.1|  669|Caenorhabditis elegans daf-1 protein.        27   8.1  
AF067616-9|AAP82657.1|  669|Caenorhabditis elegans Abnormal daue...    27   8.1  

>AF067616-10|AAC19189.2|  668|Caenorhabditis elegans Abnormal dauer
           formation protein1, isoform b protein.
          Length = 668

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/25 (44%), Positives = 21/25 (84%), Gaps = 1/25 (4%)
 Frame = +3

Query: 225 CITRSIS-KLMDSTKKFTVYETYRC 296
           C TR ++ ++++ST +FTV+E+Y+C
Sbjct: 464 CGTRYLAPEILNSTMQFTVFESYQC 488


>Z50006-5|CAA90300.1|  301|Caenorhabditis elegans Hypothetical
           protein T07C5.4 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 135 CLVCKNKICIDTKSAQIMRRFNLDNVTYAGCITRSISKLMDSTKKFTVYETYRCMPL 305
           C+ C+   C+D    QI +   L+ +        S   L+DSTK+ T Y + + +P+
Sbjct: 62  CMFCRFHKCVDVGMLQIFQYSQLEKLI-------SSLTLLDSTKESTFYYSTKIVPI 111


>AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical
           protein T22B11.4b protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -2

Query: 214 VTLSRLNLRIICAD--FVSMQILFLHTKQQPVFNMFVLGFGSL*YYNNS 74
           +  S LNL+I+  +  F+S QI     + +P+F++F +       YNNS
Sbjct: 560 INCSNLNLQILLNNLFFISSQIALKCVQSRPIFDLFEVSLHE--NYNNS 606


>AF003145-7|AAB57714.2|  352|Caenorhabditis elegans Serpentine
           receptor, class z protein4 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -3

Query: 174 ILCQCRFYFYTPNSSQSSICLF*VLEACNIIIIVNVYNLMYVLIIFKMCQ*IL 16
           ++C  +FY Y   S  +   LF  L A   + IV+++   +V I     Q +L
Sbjct: 65  VICSMQFYIYVTLSIGAITWLFFDLTAAGCVFIVSLFFAYFVAITVTSVQNVL 117


>Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical
           protein F35E2.1 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 217 YVTLSRLNLRIICADFVSMQILFLHTKQQPVFNMFVLGF 101
           +VTL    L I    F +  +  L   QQPV+ +FV  F
Sbjct: 81  FVTLGSFLLNIPLILFQAWMVFNLQAGQQPVYTVFVCSF 119


>M32877-1|AAA28001.1|  669|Caenorhabditis elegans daf-1 protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 222 GCITRSISKLMDSTKKFTVYETYRC 296
           G +     ++++ST +FTV+E+Y+C
Sbjct: 465 GTVRYLAPEILNSTMQFTVFESYQC 489


>AF067616-9|AAP82657.1|  669|Caenorhabditis elegans Abnormal dauer
           formation protein1, isoform a protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 222 GCITRSISKLMDSTKKFTVYETYRC 296
           G +     ++++ST +FTV+E+Y+C
Sbjct: 465 GTVRYLAPEILNSTMQFTVFESYQC 489


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,463,213
Number of Sequences: 27780
Number of extensions: 249301
Number of successful extensions: 475
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)