Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332C01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    31   0.079
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    27   2.2  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    26   3.0  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    25   9.0  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    25   9.0  

>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 31.5 bits (68), Expect = 0.079
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -1

Query: 221 PSCGRKVRVVNGAYRGCVGTLRDVRTDAYSCDIEIAEGPLTGRLVKGVEYEDISKL 54
           P+CG  +R+     +   G + DV+   + C   IA       +VKG+  E+ SK+
Sbjct: 86  PACGDVMRLAIRVNKD--GVIEDVKFKTFGCGSAIASSSYVTTMVKGMTLEEASKI 139


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 155 DVRTDAYSCDIEIAEGPLTGRLVKGVEYEDISK 57
           +VR D   C I+I    +     +  +Y+DI K
Sbjct: 213 EVRNDLIDCQIDICSNDVPALFTENFDYQDIRK 245


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 149 RTDAYSCDIEIAEGPLTGRL 90
           +T++ +CD+   EGPLT +L
Sbjct: 200 KTNSLNCDVTYEEGPLTKKL 219


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 224 VPSCGRKVRVVNGAYRGCVGTL 159
           +P+C   +RV++G   G  G L
Sbjct: 130 IPNCSNSIRVIDGKAEGMYGWL 151


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 297 FIDDSLNDRLPLVKLIAQRFRNYFDY 374
           F+D+S++D   ++  +A +  N+ DY
Sbjct: 54  FLDESIDDEDEVLSALADQLGNFVDY 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,636
Number of Sequences: 5004
Number of extensions: 24765
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)