Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332C01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032654-9|CAA21720.1|  404|Caenorhabditis elegans Hypothetical ...   140   4e-34
Z81510-6|CAB04161.3|  327|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>AL032654-9|CAA21720.1|  404|Caenorhabditis elegans Hypothetical
           protein Y52B11A.9 protein.
          Length = 404

 Score =  140 bits (340), Expect = 4e-34
 Identities = 71/152 (46%), Positives = 96/152 (63%)
 Frame = -1

Query: 506 KEDSXRIRIEESTSRQSALDXXXXXXXXXXXXANRKDYWLTEGIVVKIVTKSLGDKFYKR 327
           K    R    +  S++SALD             NRKDYW+ EGIVVK++TKSLG ++YK 
Sbjct: 255 KRSRSRSPAAKKFSKKSALDEIKEMEERKKERKNRKDYWMREGIVVKVITKSLGSEYYKA 314

Query: 326 KAVVERVIDKYGAEVRIVDEKIKLKLDQNHLETVVPSCGRKVRVVNGAYRGCVGTLRDVR 147
           K VV +V+D Y A+V++ D+   +KLDQ H+ETV+PS GR++ +VNGAYRG   TL  + 
Sbjct: 315 KGVVRKVVDDYTAQVKL-DDGTVVKLDQEHVETVIPSLGRQMMIVNGAYRGQEATLESID 373

Query: 146 TDAYSCDIEIAEGPLTGRLVKGVEYEDISKLA 51
              +S  ++IA GP  GR +  V YED SKLA
Sbjct: 374 EKRFSLRLKIASGPTRGRQI-DVPYEDASKLA 404


>Z81510-6|CAB04161.3|  327|Caenorhabditis elegans Hypothetical
           protein F21D9.2 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -1

Query: 293 GAEVRIVDEKIKLKLDQNHL-ETVVPSCGRKVRVVNGAYRGCVGTLRDVRTDAYSCDIEI 117
           G++ R+V+ + ++   Q  + ETV    G + RVV    R      R V TD + C +++
Sbjct: 19  GSQARVVESEDRVPGSQARVVETVARVPGSQARVVESEDRVPGSQARVVETDKWKCAVKL 78


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical protein
            C27B7.4 protein.
          Length = 1274

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 326  KAVVERVIDKYGAEVRIVDE-KIKLKLDQNHLETVV 222
            +++  R I K+G + R+VD+ ++   + Q  LET++
Sbjct: 922  RSIFNRQISKHGLQQRVVDDAQVDANISQKELETLL 957


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,720,029
Number of Sequences: 27780
Number of extensions: 143127
Number of successful extensions: 351
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)