Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332B12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   3.9  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   5.2  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    25   5.2  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    25   9.0  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.0  

>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 460 TISRIVSFNLPTSFGLWRVLNGRQRLGSASGIAEVHGRR*LLTIR-WAVCSS 308
           TI  +V FN PT+ GL            A G+ +  GRR LL +  W + ++
Sbjct: 363 TIFEVVGFNNPTATGLIIAATNFVFTIVAFGVIDFFGRRILLLLTVWGMIAA 414


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 78  IPSISEWTTYILIVKVNYIDLLNYRIHVFRNSRI 179
           +  +++W  Y  +    Y+DL  Y    ++NS+I
Sbjct: 669 VAPVTDWRLYDSVYTERYMDLPQYNKEGYKNSQI 702


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 297 GKKKVCVSAPTHDWSLLDININLCQLN 217
           G K+V +SAP+ D  +  + +NL + N
Sbjct: 115 GAKRVIISAPSKDAPMFVVGVNLEKFN 141


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 471 RNIELFLVLFRLIYRH 424
           +NIELF+ L+  +YRH
Sbjct: 331 KNIELFIRLYSQMYRH 346


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +3

Query: 279  HTLFFFPL*ADEHTAHLMVSSYRRPWTSAIPEAEPSRCLPFNTLHKPNDVGKLNETIREI 458
            HT FF P  ++   A   +S + +   + IPE  P   +P  T+  P+   K+  ++REI
Sbjct: 869  HTTFF-PANSE---AERRLSFFAQSLATPIPEPVPVDNMPTFTVLIPHYAEKILLSLREI 924

Query: 459  VLYYDNTIHYRLL 497
            +   D      LL
Sbjct: 925  IREEDQLSRVTLL 937


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,653
Number of Sequences: 5004
Number of extensions: 47888
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)