Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332B12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1157 - 24419157-24419948                                         25   1.7  
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925...    29   2.3  
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126...    28   5.2  
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     27   9.1  
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    27   9.1  

>07_03_1157 - 24419157-24419948
          Length = 263

 Score = 25.0 bits (52), Expect(2) = 1.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 149 PHPRVPQLPDH 181
           PHP VP+LP H
Sbjct: 196 PHPAVPELPKH 206



 Score = 23.0 bits (47), Expect(2) = 1.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 146 LPHPRVPQLP 175
           LPHP VP++P
Sbjct: 146 LPHPAVPEIP 155


>07_01_1055 -
           9253936-9254130,9254271-9254483,9254588-9254758,
           9255743-9255859,9257021-9257186,9258885-9258934,
           9259095-9259268
          Length = 361

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 78  IPSISEWTTYILIVKVNYIDLLNYRIHVFRNSRIILT-RIRNFHILL 215
           +PSI   T   ++ + N   L+  R  V R  R ILT R RNF+I L
Sbjct: 201 LPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERARNFNIAL 247


>01_07_0238 +
           42209407-42209964,42210039-42210561,42212577-42212665,
           42212981-42213191,42213265-42213446,42213573-42213812,
           42214691-42214878,42215230-42215323,42215407-42215463,
           42215552-42215686,42216460-42216525,42216745-42216858,
           42217849-42218010,42218093-42218221,42218323-42218424,
           42219428-42219504,42219600-42219957
          Length = 1094

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 356 PWATVTTHHQVGRMLVCLQGEKKKC 282
           PW++VT HH  G++++ ++   +KC
Sbjct: 904 PWSSVTKHHFKGKVVLIMEILIRKC 928


>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -3

Query: 393 GSGLALPLVLLKSMGDGNYSPSGGPYARL 307
           GS LA  L LL  M      PSG  YARL
Sbjct: 64  GSDLASSLRLLADMQAAGLRPSGAAYARL 92


>01_06_0903 +
           32862551-32864752,32865341-32865535,32866219-32866523,
           32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 336 SPSGGPYARLPTRGKKKVCVSAPTHDWSLLD 244
           SPSGG      +  + K  V  P H W  LD
Sbjct: 99  SPSGGRVRLYASAARAKYLVDTPEHIWGRLD 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,777,181
Number of Sequences: 37544
Number of extensions: 303762
Number of successful extensions: 637
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)