Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332B12f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK027618-1|BAB55237.1|  849|Homo sapiens protein ( Homo sapiens ...    31   2.4  
AF061739-1|AAD17528.1|  186|Homo sapiens unknown protein.              30   4.3  

>AK027618-1|BAB55237.1|  849|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14712 fis, clone NT2RP3000825, weakly similar to
           NEUROGENIC LOCUS NOTCH 3 PROTEIN. ).
          Length = 849

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -3

Query: 354 MGDGNYSPSGGPYARLPTRGKKKVCVSAPTHDWSLLDININLCQLNTVKYGSYV 193
           + D N+SP  G Y          +CV  P    SL +++I+ CQ N    GSY+
Sbjct: 449 VSDRNFSPGSGVY----------LCVCLPGFHGSLCEVDISGCQSNPCGLGSYI 492


>AF061739-1|AAD17528.1|  186|Homo sapiens unknown protein.
          Length = 186

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -3

Query: 357 SMGDGNYSPSGGPYARLPTRGKKKVCVSAPTHDWSLLDININLCQLNTVKY 205
           S+ D    PS      L  R KK++ VS     W LL +N  + ++ TV Y
Sbjct: 111 SVSDTAQQPSEEQSKSLDNRNKKRIAVSCAGRKWDLLGLNAGV-EMFTVVY 160


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,692,194
Number of Sequences: 237096
Number of extensions: 1655185
Number of successful extensions: 2658
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2658
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)