Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332B12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016670-1|AAB66108.2| 512|Caenorhabditis elegans Hypothetical ... 31 0.50
U53339-2|AAA96198.2| 542|Caenorhabditis elegans Nematode astaci... 29 1.5
Z98262-2|CAD44155.1| 484|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z71260-3|CAD44115.1| 484|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical pr... 28 4.7
U41264-10|AAA82430.2| 164|Caenorhabditis elegans Hypothetical p... 27 6.2
AL110490-1|CAB54439.1| 674|Caenorhabditis elegans Hypothetical ... 27 6.2
U41016-1|AAA82318.1| 203|Caenorhabditis elegans Glutathione s-t... 27 8.1
AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya bi... 27 8.1
>AF016670-1|AAB66108.2| 512|Caenorhabditis elegans Hypothetical
protein K02F6.7 protein.
Length = 512
Score = 31.1 bits (67), Expect = 0.50
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +3
Query: 156 HVFRNSRIILTRIRNFHILLYSTDTNLYLYPVN-SSRASERTHTLFFFPL*ADEHTAHLM 332
H+FRN+ I R ++ +L+Y + + YL V +R + T + FF E +
Sbjct: 237 HIFRNNTISPHRFQDLQVLVYLEEDHFYLAHVKCKTRKTGLTDSYFFQISRGTELVRDSL 296
Query: 333 VSSYRRPWTSAIPEAEPSRCLPFNTLHKPNDV 428
+S + P + +A LH P D+
Sbjct: 297 LSDNKMPVQFHLNDARIFGYRDLERLHFPIDL 328
>U53339-2|AAA96198.2| 542|Caenorhabditis elegans Nematode astacin
protease protein29 protein.
Length = 542
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 399 FNTLHKPNDVGKLNETIREIVLYYDNTIHYRLLT 500
+N KP +GKLN+ R+I+ D I Y+ L+
Sbjct: 79 YNYSEKPISIGKLNKKYRDILFEGDMAISYKQLS 112
>Z98262-2|CAD44155.1| 484|Caenorhabditis elegans Hypothetical
protein F15C11.2b protein.
Length = 484
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 306 ADEHTAHLMVSSYRRPWTSAIPEAEP--SRCLPFNTLHKPNDVGKLNETIREIVLYYDNT 479
AD HT HL++ + RP T A A P S + P D+ + +R ++ DN
Sbjct: 69 ADGHTVHLVIRNQARP-TPAPAAATPTASSAPTMGGMGSPADILNNPDAMRSVM---DNP 124
Query: 480 IHYRLLTN 503
I +LL N
Sbjct: 125 ITQQLLGN 132
>Z71260-3|CAD44115.1| 484|Caenorhabditis elegans Hypothetical
protein F15C11.2b protein.
Length = 484
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 306 ADEHTAHLMVSSYRRPWTSAIPEAEP--SRCLPFNTLHKPNDVGKLNETIREIVLYYDNT 479
AD HT HL++ + RP T A A P S + P D+ + +R ++ DN
Sbjct: 69 ADGHTVHLVIRNQARP-TPAPAAATPTASSAPTMGGMGSPADILNNPDAMRSVM---DNP 124
Query: 480 IHYRLLTN 503
I +LL N
Sbjct: 125 ITQQLLGN 132
>Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical
protein T06E6.6 protein.
Length = 329
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/48 (20%), Positives = 28/48 (58%)
Frame = +3
Query: 99 TTYILIVKVNYIDLLNYRIHVFRNSRIILTRIRNFHILLYSTDTNLYL 242
+TY++ + +N D + + +++ + + I++ + + +TD NL+L
Sbjct: 139 STYMIPIMINVPDQMKGKEFIYKQVPSLSSEIKSMELYVLATDYNLFL 186
>U41264-10|AAA82430.2| 164|Caenorhabditis elegans Hypothetical
protein F10E7.3 protein.
Length = 164
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 244 YKYKFVSVEYSKIWKLRILVRMIRELRN 161
+KY F V +SK WK+ + + LRN
Sbjct: 125 FKYYFGKVSFSKYWKISKFFKNVGVLRN 152
>AL110490-1|CAB54439.1| 674|Caenorhabditis elegans Hypothetical
protein Y48B6A.1 protein.
Length = 674
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -1
Query: 203 EVTYSSENDPGVAEHVDAVIK*VYIIHFYN*YISCPFTDRRNCLYLISF 57
+VT+ S+ D + +D + K VY+ CPF R+ + ++F
Sbjct: 465 QVTWHSKGDYFASVAIDDIAKSVYVHQLSKAKSQCPFQKRKGHVQAVTF 513
>U41016-1|AAA82318.1| 203|Caenorhabditis elegans Glutathione
s-transferase protein11 protein.
Length = 203
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 87 ISEWTTYILIVKVNYIDLLNYRIHVFRNSRIILTRIRNF 203
++ T Y + K++Y DL + I F NS+I+ +R +
Sbjct: 137 VTNGTGYFVGDKISYADLAIFHIFWFMNSKILPGALRKY 175
>AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya
binding family protein 3 protein.
Length = 751
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 225 DTNLYLYPVNSSRASERTHTLFFFPL*ADEHTAHLMVSSYRRPWTSAIPEAEPSRCLPFN 404
DT+ + YP+ S R + R H +F + + H+ S +R+ P E + C+ N
Sbjct: 471 DTDKFKYPIGSGRVTFREHGAYFKAI--EMGYLHVYTSKFRKR-VQIDPFLESTCCMVCN 527
Query: 405 T 407
+
Sbjct: 528 S 528
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,137,851
Number of Sequences: 27780
Number of extensions: 265113
Number of successful extensions: 581
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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