Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332B10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0085 - 8271718-8272005,8272110-8272393,8273610-8274012,827...    27   6.9  
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873...    27   6.9  
02_05_0819 - 32014236-32016059                                         27   6.9  
03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009...    27   9.1  
01_05_0159 + 18716055-18716272,18716900-18718529,18718622-187186...    27   9.1  

>05_03_0085 -
           8271718-8272005,8272110-8272393,8273610-8274012,
           8274792-8274816,8275686-8276149
          Length = 487

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 295 VVLKYSKSS--NFKGTKFGFVPSVEKDFGNGDAFLTEYPYQI 414
           V+L +SK S   F   +     ++  DF +GD+  T YPYQ+
Sbjct: 268 VILAFSKISPNKFHLAEHDDKTTLSFDFSSGDSVSTYYPYQL 309


>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
            19387454-19388884,19388953-19389118,19392035-19392114,
            19392393-19392462,19392550-19392761,19392837-19392890,
            19393471-19393623,19393715-19393930,19394029-19394248,
            19394332-19394399,19394510-19394643,19394755-19394854,
            19394943-19395421,19395506-19395699,19396270-19396355,
            19396364-19396444,19396842-19397023,19397305-19397346,
            19398247-19398558,19399374-19399434,19399435-19399617,
            19399744-19399863,19400380-19401051,19402597-19402668,
            19402742-19402865,19403563-19403651,19405023-19405097
          Length = 2170

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -1

Query: 380  PLPKSF---STDGTKPNFVPLKFEDFEYFNTTSLSSSNDLPNIKL*MALWSPL 231
            P P S+   S D   P+FV  + +      +T  SSSN LP++     LWS L
Sbjct: 1871 PFPPSYLMQSFDACMPSFVGHQVQTENVLPSTGDSSSNALPSVDA-KFLWSTL 1922


>02_05_0819 - 32014236-32016059
          Length = 607

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
 Frame = +1

Query: 331 GTKFGFVPSVEKDFGNGDAF----LTEYPYQILKEGKFNKVPVI------RGFCEFEGYL 480
           G + GFVP   +DFG+G AF    + +YP  + +  +     ++      +G   F+  +
Sbjct: 58  GKRGGFVPRRPEDFGDGGAFPEIHVAQYPLGMGRRDEKGGSKILALTVDAKGSVAFDAVV 117

Query: 481 TXGEKPSDLV 510
             GE  S +V
Sbjct: 118 KQGENASKIV 127


>03_06_0198 -
           32299480-32299643,32300084-32300126,32300843-32300929,
           32301063-32301098,32301187-32301295,32301408-32301499,
           32302029-32302115,32303887-32304222
          Length = 317

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 98  CHLRLEDYFNRQYYNLDPVSITGPLNMTSK 187
           C L L   F++ YY LD + I G L  +SK
Sbjct: 210 CELDLIFNFHKAYYILDEILIAGELQESSK 239


>01_05_0159 +
           18716055-18716272,18716900-18718529,18718622-18718693,
           18718800-18719213
          Length = 777

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 122 NNPLDEGDNCKYSTDADPALIPNIVTLS 39
           N  +D  DNC    DAD  +I +IV L+
Sbjct: 388 NKIMDNPDNCNKVADADGQVIASIVNLT 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,753,926
Number of Sequences: 37544
Number of extensions: 278677
Number of successful extensions: 688
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)