Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332B09f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family... 30 0.18
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 29 0.56
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei... 28 0.73
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 28 0.97
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 27 1.3
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 27 2.2
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 27 2.2
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 26 3.0
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 3.9
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 26 3.9
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 26 3.9
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 5.2
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||... 25 6.8
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 25 6.8
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.0
>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 30.3 bits (65), Expect = 0.18
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +2
Query: 140 GAGLMGAGIVQVSIDKGYNVVMKDAT 217
G+G++G I+Q ++D+G++V D+T
Sbjct: 43 GSGILGHAIIQEALDRGFSVASLDST 68
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 28.7 bits (61), Expect = 0.56
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 107 SQVDVKTIGVLGAGLMGAGIVQVSIDKGYNVVMKDATNA 223
SQ +V G++G +MG ++ DKG+ V + T +
Sbjct: 2 SQKEVADFGLIGLAVMGQNLILNGADKGFTVCCYNRTTS 40
>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 28.3 bits (60), Expect = 0.73
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 119 VKTIGVLGAGLMGAGIVQVSIDKGYNVVMKDATNAG 226
+K + + G+G +G I +++I KGY VV AG
Sbjct: 1 MKIVVLGGSGFLGHNICKLAIAKGYEVVSVSRRGAG 36
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 27.9 bits (59), Expect = 0.97
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +2
Query: 20 GELAMTPQSKGLIGLFRGQTECKKNRFGKSQVDVKTIGVLGAGLMGAGIVQVSID 184
G + SKG++ ++ Q+ K+ FG+S + K + + + +V S+D
Sbjct: 456 GNFGLIGSSKGVVDVYNMQSGIKRKSFGQSSLSGKPVTAVMLDNVNRILVTASLD 510
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 131 GVLGAGLMGAGIVQVSIDKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRK--RISSLQK 304
G+LG G G G V +S+ KG+ + + + + + + G +N RK + L+K
Sbjct: 159 GILGIGDQGVGGVLISVAKGHLMTLCAGLDPNRFLPI-VLDVGTNNETHRKNHQYMGLRK 217
Query: 305 DK 310
D+
Sbjct: 218 DR 219
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 140 GAGLMGAGIVQVSIDKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRKRISSLQKD 307
GAG +G+ V I+ GY V++ D Y V +++ + ++K ++ K+
Sbjct: 13 GAGYIGSHTVIELINHGYKVIIVDNLCNSCYDAVARVEFIVRKSIKFFKLDLRDKE 68
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 2.2
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +2
Query: 122 KTIGVLGAGLMGAGIVQVSIDKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRKRISSLQ 301
KT+ VLGAG I++ +NV++ N L+ + + + + +V + I +Q
Sbjct: 92 KTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSL--LPSTATGSVHTRSI--VQ 147
Query: 302 KDKYLSNLLPTLDYAKFKNADCV-IEAVFEDINIK 403
+Y+ L Y KF A+C ++A + I+IK
Sbjct: 148 PIRYM--LRHKSCYVKFYEAECTDVDADKKVIHIK 180
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 140 GAGLMGAGIVQVSIDKGYNVVMKD 211
GAG +G+ V ++KGY+VV+ D
Sbjct: 14 GAGYIGSHTCVVLLEKGYDVVIVD 37
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -2
Query: 493 CDFCNRYSTSVCGYNTMFRHY 431
C FC Y + NT+F HY
Sbjct: 1166 CTFCCWYYAGIIFLNTLFHHY 1186
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 401 KHKVIKELEAVVPKHCIIATNTSAIPITKIAAGS 502
+H++ KE + V+ + CII T TK+ S
Sbjct: 310 RHQIYKEEDVVLARSCIIKARTLIGAYTKVGDAS 343
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 3.9
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 127 DWCSWCRFDGR 159
DW WCRF GR
Sbjct: 512 DWNGWCRFRGR 522
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 228 KPALVASFITTL*PLSIDTCTIPAPIKPAPRTPIVFTST 112
+PA S + P + +P P + PR P+ F ST
Sbjct: 29 EPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPLPFRST 67
>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 132 PIVFTSTWDFPNLFFLHSVCPR 67
P++FT W NL + CPR
Sbjct: 176 PVIFTRNWSDENLLPNENNCPR 197
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = +2
Query: 233 RGVGQIQTGLSNAVKRKRISSLQKDKYLSNLLPTLDYAKFKNADCVIEAVFE 388
R + + TG++ A ++S + DK+++ L A F + V+ +F+
Sbjct: 368 RVISAVLTGVNRAYPFAEVNSEKFDKHMNTLFAITHTASFNTSVQVLMLIFQ 419
>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 282
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +3
Query: 276 NAKEFHLYKRISTYRIYFLHWTMPSS 353
+A + HL+K++ T + + W P S
Sbjct: 122 DATKLHLHKKLKTQKFDTIFWNFPHS 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,157,040
Number of Sequences: 5004
Number of extensions: 44500
Number of successful extensions: 150
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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