Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332B09f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 110 6e-25
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 107 5e-24
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 99 2e-21
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 91 7e-19
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 87 1e-17
09_06_0180 - 21385655-21386017,21386399-21386623,21386859-21387305 35 0.046
08_02_0588 + 19036509-19039235 31 0.42
03_05_0961 - 29224548-29225125,29225286-29225308,29225736-292258... 29 2.3
11_04_0288 - 15802010-15803506 29 3.0
06_03_0569 + 22361917-22362291 28 5.2
03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012 28 5.2
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460... 27 6.9
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 27 6.9
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 110 bits (265), Expect = 6e-25
Identities = 65/177 (36%), Positives = 95/177 (53%), Gaps = 5/177 (2%)
Frame = +2
Query: 5 EAQGFGELAMTPQSKGLIGLFRGQTECKKNRFGKSQVDVKT-----IGVLGAGLMGAGIV 169
EA+ F EL ++P SK L+ F Q K G + V +K + V+G GLMG+GI
Sbjct: 267 EAKVFKELVLSPTSKALVHAFFAQRLTTKVP-GVTDVQLKPRKIRKVAVIGGGLMGSGIA 325
Query: 170 QVSIDKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRKRISSLQKDKYLSNLLPTLDYAK 349
+ +VV+K+ L RG I L VKR ++ + +K +S L LDY+
Sbjct: 326 TALLVSNTSVVLKEVNPQFLQRGQKMIAANLEGLVKRGSLTKDKMNKAMSLLKGALDYSD 385
Query: 350 FKNADCVIEAVFEDINIKHKVIKELEAVVPKHCIIATNTSAIPITKIAAGSSRPDKV 520
FK+ D VIEAV E I +K + +LE V P HCI+ATNTS I + + ++ D++
Sbjct: 386 FKDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCILATNTSTIDLNVVGEKTNSQDRI 442
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 107 bits (257), Expect = 5e-24
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 4/176 (2%)
Frame = +2
Query: 5 EAQGFGELAMTPQSKGLIGLFRGQTECKK----NRFGKSQVDVKTIGVLGAGLMGAGIVQ 172
EA F L K L+ +F Q K G V + +LG GLMG+GI
Sbjct: 272 EANAFQGLLFADTCKNLVHVFFSQRATSKVPGATDLGLMPRKVTKVAILGGGLMGSGIAT 331
Query: 173 VSIDKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRKRISSLQKDKYLSNLLPTLDYAKF 352
I Y V++K+ L G+ +I+ L + V++ +++ + +K +S + LDY +F
Sbjct: 332 AMILSNYPVILKEVNEKFLNAGIDRIKANLQSRVRKGKMTEERYEKAMSLVTGVLDYERF 391
Query: 353 KNADCVIEAVFEDINIKHKVIKELEAVVPKHCIIATNTSAIPITKIAAGSSRPDKV 520
K+ D VIEAV E++ +K ++ +LE P HC++ATNTS I + I + D++
Sbjct: 392 KDVDLVIEAVIENVKLKQQIFSDLEKYCPSHCVLATNTSTIDLNLIGEKTRSKDRI 447
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 98.7 bits (235), Expect = 2e-21
Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 4/169 (2%)
Frame = +2
Query: 26 LAMTPQSKGLIGLFRGQTECKK----NRFGKSQVDVKTIGVLGAGLMGAGIVQVSIDKGY 193
L M+ SK L +F Q K + G + + + ++G GLMG+GI I
Sbjct: 276 LEMSQISKSLRHVFFAQRATSKIPNISILGLTPRRIHKVAIVGGGLMGSGIATALISNNL 335
Query: 194 NVVMKDATNAGLYRGVGQIQTGLSNAVKRKRISSLQKDKYLSNLLPTLDYAKFKNADCVI 373
V++K+ L G+ +++ L + VKR +++ + LS L LDY +F+ AD VI
Sbjct: 336 LVILKEVNEQFLDAGISRVKANLQSLVKRGQMTKEDYENKLSLLSGVLDYEQFREADVVI 395
Query: 374 EAVFEDINIKHKVIKELEAVVPKHCIIATNTSAIPITKIAAGSSRPDKV 520
EAV ED+++K K+ +LE +CI+ATNTS I + I +S D++
Sbjct: 396 EAVIEDLSLKQKIFADLEKYCHSNCILATNTSTIDLHLIGQKTSCQDRI 444
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 90.6 bits (215), Expect = 7e-19
Identities = 45/135 (33%), Positives = 79/135 (58%)
Frame = +2
Query: 116 DVKTIGVLGAGLMGAGIVQVSIDKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRKRISS 295
++ +GV+GAG MG+GI Q++ G V++ D+ A L R V I + L V + ++S
Sbjct: 9 EIAVVGVIGAGQMGSGIAQLAAAAGCGVLLLDSDTAALSRAVDSISSSLRRLVAKGQLSQ 68
Query: 296 LQKDKYLSNLLPTLDYAKFKNADCVIEAVFEDINIKHKVIKELEAVVPKHCIIATNTSAI 475
+ + + + ++AD VIEA+ E +IK K+ EL+ + I+A+NTS+I
Sbjct: 69 ASCEHSIEQIKCVSSVQELRDADLVIEAIVESEDIKKKLFVELDKITKPSAILASNTSSI 128
Query: 476 PITKIAAGSSRPDKV 520
IT++A+ ++RP +V
Sbjct: 129 SITRLASATNRPCQV 143
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 86.6 bits (205), Expect = 1e-17
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 23/195 (11%)
Frame = +2
Query: 5 EAQGFGELAMTPQSKGLIGLFRGQTECKK----NRFGKSQVDVKTIGVLGAGLMGAGIVQ 172
EA F +L + K L+ +F Q K G V + ++G GLMG+GI
Sbjct: 268 EAIAFQDLVFSDTCKSLVHVFFSQRATSKVPGITDLGLMPRKVSKVAIVGGGLMGSGIAT 327
Query: 173 VSIDKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRKRISSLQKDKYLSNLLPTLDYAKF 352
+ Y VV+K+ + L G+ +I+ L + V+ +++ +K LS L +DY +F
Sbjct: 328 ALMLSNYPVVLKEVNDKFLDAGIDRIKANLQSRVRNGKMTKEIYEKTLSLLTGVVDYERF 387
Query: 353 KNADCVIE-------------------AVFEDINIKHKVIKELEAVVPKHCIIATNTSAI 475
K+ D VIE AV E++ +K +V +LE P HC++ATNTS I
Sbjct: 388 KDVDLVIEESNTSNCYLAIYFIEQYWMAVVENVKVKQQVFADLERYCPSHCVLATNTSTI 447
Query: 476 PITKIAAGSSRPDKV 520
+ I ++ D++
Sbjct: 448 DLDLIGEKTNSQDRI 462
>09_06_0180 - 21385655-21386017,21386399-21386623,21386859-21387305
Length = 344
Score = 34.7 bits (76), Expect = 0.046
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +2
Query: 113 VDVKTIGVLGAGLMGAGIVQVSIDKGYNVVMKDA 214
+D K +G++GAG+ G + S+DKG+N ++ +A
Sbjct: 1 MDRKRVGIIGAGVSGLAACKHSLDKGFNPIVFEA 34
>08_02_0588 + 19036509-19039235
Length = 908
Score = 31.5 bits (68), Expect = 0.42
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 65 FRGQTECKKNRFGKSQVDVKTIGVLGAGLMGAGIV 169
F+G EC+ +R GKS ++V T V G G+M + I+
Sbjct: 552 FKGTRECENDRMGKSSMNVAT-EVFGDGMMRSKIL 585
>03_05_0961 -
29224548-29225125,29225286-29225308,29225736-29225864,
29226533-29228217
Length = 804
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 164 IVQVSIDKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRKRISSLQKDKYLSNL 325
+V+ + D G + ++K + LY +G + G S VKR S +KD Y++ L
Sbjct: 426 LVEATTDFGDDRLIKHGHSGDLY--LGALHDGTSVVVKRITSSMAKKDAYMAEL 477
>11_04_0288 - 15802010-15803506
Length = 498
Score = 28.7 bits (61), Expect = 3.0
Identities = 21/98 (21%), Positives = 41/98 (41%)
Frame = +2
Query: 200 VMKDATNAGLYRGVGQIQTGLSNAVKRKRISSLQKDKYLSNLLPTLDYAKFKNADCVIEA 379
+M+ + G+ VG + G +K ++++ L + AD V+E
Sbjct: 193 LMQPGNHLGVLPIVGGPEVGKGTIIKHVCNDDRVRNRFDMILYSYGSILQINPADDVLET 252
Query: 380 VFEDINIKHKVIKELEAVVPKHCIIATNTSAIPITKIA 493
+ +I H+ ++ KH I+ NT + I K+A
Sbjct: 253 LTSHGHILHQADVSTSSLHRKHLIVIKNTYEVVIDKVA 290
>06_03_0569 + 22361917-22362291
Length = 124
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 136 SWCRFDGRRYSASVNRQRLQCRNERR 213
SWC + GRR+ A R +L CR+ R+
Sbjct: 56 SWCPWTGRRH-AQYLRHQLPCRHRRQ 80
>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
Length = 890
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 302 KDKYLSNLLPTLDYAKFKNADCVIEAVFEDINIKHKVIKEL 424
K+KY+S+L P K KN + ++FED I + ++E+
Sbjct: 551 KEKYISSLPPLFAEKKKKNEQPDLISLFEDQKIMKQDLEEI 591
>08_02_0590 +
19044193-19044364,19044464-19045047,19045085-19046059,
19046219-19046605
Length = 705
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 65 FRGQTECKKNRFGKSQVDVKT 127
F+G EC+ +R GKS ++V T
Sbjct: 402 FKGTRECENDRMGKSSMNVAT 422
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 263 SNAVKRKRISSLQKDKY-LSNLLPTLDYAKFKNADCVIEAVFEDINIKHKVIKELEAV 433
+N +I+ LQ +K LS+ L L+ A F+N +E E I+I HK ++LE V
Sbjct: 454 TNGDLNDKIAVLQNEKNSLSSELQQLE-ASFENLGNDLEQELERISIMHKNNEDLELV 510
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 263 SNAVKRKRISSLQKD-KYLSNLLPTLDYAKFKNADCVIEAVFEDINIKHKVIKELE 427
+N +I+ LQK+ L++ L L+ A FKN +E FE I++ K +ELE
Sbjct: 713 TNGDLNDKIAVLQKEGSSLASELQQLE-ASFKNLGNDLEQKFEQISVMQKNNEELE 767
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,413,914
Number of Sequences: 37544
Number of extensions: 278522
Number of successful extensions: 763
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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