Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332B09f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 206 1e-53
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 206 1e-53
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 206 1e-53
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 192 1e-49
Z81055-2|CAB02891.2| 437|Caenorhabditis elegans Hypothetical pr... 77 8e-15
Z46240-3|CAA86312.1| 309|Caenorhabditis elegans Hypothetical pr... 71 5e-13
Z22178-1|CAA80153.1| 298|Caenorhabditis elegans Hypothetical pr... 71 7e-13
Z81055-3|CAB02892.2| 434|Caenorhabditis elegans Hypothetical pr... 59 2e-09
AF039046-12|AAB94215.1| 299|Caenorhabditis elegans Hydroxy-acyl... 54 6e-08
AC024201-11|ABQ13050.1| 284|Caenorhabditis elegans Hypothetical... 35 0.041
AC024201-10|ABQ13051.1| 281|Caenorhabditis elegans Hypothetical... 35 0.041
AF002196-9|AAV34797.1| 475|Caenorhabditis elegans Hypothetical ... 29 2.0
AF002196-8|AAB53976.2| 586|Caenorhabditis elegans Hypothetical ... 29 2.0
Z83125-12|CAB05627.1| 302|Caenorhabditis elegans Hypothetical p... 29 2.7
Z81147-13|CAB03540.1| 302|Caenorhabditis elegans Hypothetical p... 29 2.7
U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical p... 28 3.5
U42436-4|AAF99896.2| 297|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z83222-1|CAB05712.1| 410|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF047662-5|AAC04440.1| 385|Caenorhabditis elegans Hypothetical ... 28 4.7
Z81496-11|CAB04069.2| 448|Caenorhabditis elegans Hypothetical p... 27 6.2
AY204204-1|AAO39205.1| 448|Caenorhabditis elegans nuclear recep... 27 6.2
AY204196-1|AAO39199.1| 412|Caenorhabditis elegans nuclear recep... 27 6.2
AF016664-4|AAB66068.1| 134|Caenorhabditis elegans Hypothetical ... 27 6.2
AC006777-2|AAK72308.3| 326|Caenorhabditis elegans Nuclear hormo... 27 6.2
AC006777-1|ABB51174.1| 424|Caenorhabditis elegans Nuclear hormo... 27 6.2
AC006665-3|AAF39905.1| 605|Caenorhabditis elegans Hypothetical ... 27 6.2
CU457741-8|CAM36349.1| 544|Caenorhabditis elegans Hypothetical ... 27 8.1
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 206 bits (502), Expect = 1e-53
Identities = 102/173 (58%), Positives = 132/173 (76%)
Frame = +2
Query: 2 AEAQGFGELAMTPQSKGLIGLFRGQTECKKNRFGKSQVDVKTIGVLGAGLMGAGIVQVSI 181
AEA+ FGEL+ T QSK LIGLF G T+ KKN++GK + V I V+GAGLMGAGI V+I
Sbjct: 340 AEAKAFGELSQTFQSKALIGLFDGSTDAKKNKYGKG-LPVNEIAVVGAGLMGAGIANVTI 398
Query: 182 DKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRKRISSLQKDKYLSNLLPTLDYAKFKNA 361
DKG V+ DA AG+ RG QI T L+ VKR++I+ L+K++ ++L+PT+DY+ KNA
Sbjct: 399 DKGIRTVLLDANPAGVERGQNQIATHLNKQVKRRKINKLEKERIYNHLVPTIDYSAMKNA 458
Query: 362 DCVIEAVFEDINIKHKVIKELEAVVPKHCIIATNTSAIPITKIAAGSSRPDKV 520
D VIEAVFED+ +KHKVIK++E+VV + IIA+NTSA+PI IAA SSRPDKV
Sbjct: 459 DVVIEAVFEDLQLKHKVIKQIESVVGPNTIIASNTSALPIKDIAAASSRPDKV 511
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 206 bits (502), Expect = 1e-53
Identities = 102/173 (58%), Positives = 132/173 (76%)
Frame = +2
Query: 2 AEAQGFGELAMTPQSKGLIGLFRGQTECKKNRFGKSQVDVKTIGVLGAGLMGAGIVQVSI 181
AEA+ FGEL+ T QSK LIGLF G T+ KKN++GK + V I V+GAGLMGAGI V+I
Sbjct: 314 AEAKAFGELSQTFQSKALIGLFDGSTDAKKNKYGKG-LPVNEIAVVGAGLMGAGIANVTI 372
Query: 182 DKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRKRISSLQKDKYLSNLLPTLDYAKFKNA 361
DKG V+ DA AG+ RG QI T L+ VKR++I+ L+K++ ++L+PT+DY+ KNA
Sbjct: 373 DKGIRTVLLDANPAGVERGQNQIATHLNKQVKRRKINKLEKERIYNHLVPTIDYSAMKNA 432
Query: 362 DCVIEAVFEDINIKHKVIKELEAVVPKHCIIATNTSAIPITKIAAGSSRPDKV 520
D VIEAVFED+ +KHKVIK++E+VV + IIA+NTSA+PI IAA SSRPDKV
Sbjct: 433 DVVIEAVFEDLQLKHKVIKQIESVVGPNTIIASNTSALPIKDIAAASSRPDKV 485
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 206 bits (502), Expect = 1e-53
Identities = 102/173 (58%), Positives = 132/173 (76%)
Frame = +2
Query: 2 AEAQGFGELAMTPQSKGLIGLFRGQTECKKNRFGKSQVDVKTIGVLGAGLMGAGIVQVSI 181
AEA+ FGEL+ T QSK LIGLF G T+ KKN++GK + V I V+GAGLMGAGI V+I
Sbjct: 340 AEAKAFGELSQTFQSKALIGLFDGSTDAKKNKYGKG-LPVNEIAVVGAGLMGAGIANVTI 398
Query: 182 DKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRKRISSLQKDKYLSNLLPTLDYAKFKNA 361
DKG V+ DA AG+ RG QI T L+ VKR++I+ L+K++ ++L+PT+DY+ KNA
Sbjct: 399 DKGIRTVLLDANPAGVERGQNQIATHLNKQVKRRKINKLEKERIYNHLVPTIDYSAMKNA 458
Query: 362 DCVIEAVFEDINIKHKVIKELEAVVPKHCIIATNTSAIPITKIAAGSSRPDKV 520
D VIEAVFED+ +KHKVIK++E+VV + IIA+NTSA+PI IAA SSRPDKV
Sbjct: 459 DVVIEAVFEDLQLKHKVIKQIESVVGPNTIIASNTSALPIKDIAAASSRPDKV 511
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 192 bits (468), Expect = 1e-49
Identities = 95/173 (54%), Positives = 126/173 (72%)
Frame = +2
Query: 2 AEAQGFGELAMTPQSKGLIGLFRGQTECKKNRFGKSQVDVKTIGVLGAGLMGAGIVQVSI 181
AEA+ FGEL+ T QSK L GLF G T KKN++GK + V I V+GAG MGAGI V+I
Sbjct: 314 AEAKAFGELSQTFQSKALFGLFEGSTNAKKNKYGKG-LPVNEIAVVGAGFMGAGIANVTI 372
Query: 182 DKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRKRISSLQKDKYLSNLLPTLDYAKFKNA 361
+KG V+ DA AG+ RG + T L+ +KR++IS L+++K ++L+PT+DY+ KNA
Sbjct: 373 NKGIRTVLLDANQAGVERGQNHVATHLNRQLKRQKISKLEREKIYNHLVPTIDYSAMKNA 432
Query: 362 DCVIEAVFEDINIKHKVIKELEAVVPKHCIIATNTSAIPITKIAAGSSRPDKV 520
D VIEAVFED+ +KHKVI+++E VV + IIA+NTSA+PI IAA SSR DKV
Sbjct: 433 DVVIEAVFEDLPLKHKVIRQIENVVGPNTIIASNTSALPIKDIAAASSRSDKV 485
>Z81055-2|CAB02891.2| 437|Caenorhabditis elegans Hypothetical
protein F01G10.2 protein.
Length = 437
Score = 77.0 bits (181), Expect = 8e-15
Identities = 36/136 (26%), Positives = 69/136 (50%)
Frame = +2
Query: 113 VDVKTIGVLGAGLMGAGIVQVSIDKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRKRIS 292
+ +K++ V+G G MG GI G+ + + N +++ +R++
Sbjct: 37 IPIKSVAVIGGGTMGRGIAIAFCLSGFETYLVEVNNKAAEFCKNELEITYKREKAFRRLN 96
Query: 293 SLQKDKYLSNLLPTLDYAKFKNADCVIEAVFEDINIKHKVIKELEAVVPKHCIIATNTSA 472
+ +K NL T D+ K N D ++EAVFED+ +K ++ +L+ + CI TNTS+
Sbjct: 97 DSKVEKLRKNLQITTDFQKLNNCDLIVEAVFEDMKLKKELFTKLDKICKPSCIFGTNTSS 156
Query: 473 IPITKIAAGSSRPDKV 520
+ + ++++ P KV
Sbjct: 157 LDLNEMSSVLRDPTKV 172
>Z46240-3|CAA86312.1| 309|Caenorhabditis elegans Hypothetical
protein B0272.3 protein.
Length = 309
Score = 70.9 bits (166), Expect = 5e-13
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Frame = +2
Query: 119 VKTIGVLGAGLMGAGIVQVSIDKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRKRISSL 298
+ + ++GAGLMG+GI QVS + NV + D+ + L + I L K+K
Sbjct: 22 INNVTIIGAGLMGSGIAQVSANAKLNVTVVDSNQSALEKAQQGIANSLKRVAKKKHADDA 81
Query: 299 QKDKYL-SNLLPTLDYA-----KFKNADCVIEAVFEDINIKHKVIKELEAVVPKHCIIAT 460
L S++L + + K+AD VIEA+ E+I+IK K+ E+E +I T
Sbjct: 82 AAQTALVSSVLDRIKMSTNVSDSVKDADLVIEAIVENIDIKRKLFAEVEVAAKPTTLITT 141
Query: 461 NTSAIPITKI 490
NTS++ + I
Sbjct: 142 NTSSLRLADI 151
>Z22178-1|CAA80153.1| 298|Caenorhabditis elegans Hypothetical
protein F54C8.1 protein.
Length = 298
Score = 70.5 bits (165), Expect = 7e-13
Identities = 34/133 (25%), Positives = 72/133 (54%), Gaps = 5/133 (3%)
Frame = +2
Query: 116 DVKTIGVLGAGLMGAGIVQVSIDKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRKRISS 295
+++ + ++G+G MG+GI QV+ G+NV++ D L R + I +++ K+++ +
Sbjct: 10 NIRNVAIVGSGQMGSGIAQVTASSGFNVMLADVNKKALDRAMKAISQSVTHLSKKQKGTD 69
Query: 296 LQKDKYLSNLLPTLDYAK-----FKNADCVIEAVFEDINIKHKVIKELEAVVPKHCIIAT 460
+K +++ + + +AD +IEA E+I++K + ++E K I+ T
Sbjct: 70 KEKSDFVTLTMSRIKTCNNVSTAVADADLIIEAAIENIDLKRGIFAQIEQSCKKDSILTT 129
Query: 461 NTSAIPITKIAAG 499
NTS+ + +A G
Sbjct: 130 NTSSFLLEDVAKG 142
>Z81055-3|CAB02892.2| 434|Caenorhabditis elegans Hypothetical
protein F01G10.3 protein.
Length = 434
Score = 59.3 bits (137), Expect = 2e-09
Identities = 33/127 (25%), Positives = 64/127 (50%)
Frame = +2
Query: 116 DVKTIGVLGAGLMGAGIVQVSIDKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRKRISS 295
DV ++ ++G G MG + +I G + R +++ + KR++
Sbjct: 38 DVNSVAIIGGGTMGKAM---AICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLND 94
Query: 296 LQKDKYLSNLLPTLDYAKFKNADCVIEAVFEDINIKHKVIKELEAVVPKHCIIATNTSAI 475
+ +K +NL T D+ K N D ++E+V ED+ +K ++ LE + CI TNTS++
Sbjct: 95 KRIEKINANLKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSL 154
Query: 476 PITKIAA 496
+ +I++
Sbjct: 155 DLNEISS 161
>AF039046-12|AAB94215.1| 299|Caenorhabditis elegans
Hydroxy-acyl-coa dehydrogenaseprotein 1 protein.
Length = 299
Score = 54.0 bits (124), Expect = 6e-08
Identities = 32/130 (24%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Frame = +2
Query: 128 IGVLGAGLMGAGIVQVSIDKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRKRISSLQKD 307
+ + GAG+MG+GI QV + GY V + + L I+ L +K+ +
Sbjct: 13 VAIFGAGMMGSGIAQVCLQAGYPVNLYGRSEKKLLEARETIKKNLIRVASKKKTDVPMEP 72
Query: 308 KYLSNLLPT-LDYAKF--------KNADCVIEAVFEDINIKHKVIKELEAVVPKHCIIAT 460
L + LD + ++A IEAV E++++K + + ++ P++C++ T
Sbjct: 73 AALEEIAQIQLDLLQIHTDIPSAAEDAAMAIEAVAENLDLKLDIFQTIQKTCPQNCMLIT 132
Query: 461 NTSAIPITKI 490
NTS++ ++++
Sbjct: 133 NTSSLKLSQM 142
>AC024201-11|ABQ13050.1| 284|Caenorhabditis elegans Hypothetical
protein Y71F9B.9a protein.
Length = 284
Score = 34.7 bits (76), Expect = 0.041
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 353 KNADCVIEAVFEDINIKHKVIKELEAVVPKHCIIATNTSAIPITKIAAG 499
KNA + E+ ED+N + + K ++ + I+A++TS IP +K G
Sbjct: 53 KNAIYMQESALEDLNFRIQFYKVIDEIADPTTILASSTSTIPASKFTDG 101
>AC024201-10|ABQ13051.1| 281|Caenorhabditis elegans Hypothetical
protein Y71F9B.9b protein.
Length = 281
Score = 34.7 bits (76), Expect = 0.041
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 353 KNADCVIEAVFEDINIKHKVIKELEAVVPKHCIIATNTSAIPITKIAAG 499
KNA + E+ ED+N + + K ++ + I+A++TS IP +K G
Sbjct: 53 KNAIYMQESALEDLNFRIQFYKVIDEIADPTTILASSTSTIPASKFTDG 101
>AF002196-9|AAV34797.1| 475|Caenorhabditis elegans Hypothetical
protein C09D4.1b protein.
Length = 475
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 519 TLSGRLLPAAIFVIGIALVFVA--IIQCFGTTASNSLITLCLMLMSSKTASITQ 364
T SG LL A+ + GIAL ++ ++ FGT SN +++ CL++ + T I +
Sbjct: 391 TTSG-LLNASAQIFGIALTWLMGIVMHGFGTFTSNIIMSSCLVVGTILTCFIRE 443
>AF002196-8|AAB53976.2| 586|Caenorhabditis elegans Hypothetical
protein C09D4.1a protein.
Length = 586
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 519 TLSGRLLPAAIFVIGIALVFVA--IIQCFGTTASNSLITLCLMLMSSKTASITQ 364
T SG LL A+ + GIAL ++ ++ FGT SN +++ CL++ + T I +
Sbjct: 502 TTSG-LLNASAQIFGIALTWLMGIVMHGFGTFTSNIIMSSCLVVGTILTCFIRE 554
>Z83125-12|CAB05627.1| 302|Caenorhabditis elegans Hypothetical
protein T15D6.1 protein.
Length = 302
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 185 KGYNVVMKDATNAGLYRGVGQIQTGLSNA-VKRKRISSLQKDKYLSNLLPTLDYAKF 352
+G N + + G G + T SNA + +RI +QKD Y+ NL+ DY F
Sbjct: 221 QGVNQTLIEKVQEGRKSGETEHSTHASNARFEAERI--IQKDPYIQNLIYFFDYLVF 275
>Z81147-13|CAB03540.1| 302|Caenorhabditis elegans Hypothetical
protein T15D6.1 protein.
Length = 302
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 185 KGYNVVMKDATNAGLYRGVGQIQTGLSNA-VKRKRISSLQKDKYLSNLLPTLDYAKF 352
+G N + + G G + T SNA + +RI +QKD Y+ NL+ DY F
Sbjct: 221 QGVNQTLIEKVQEGRKSGETEHSTHASNARFEAERI--IQKDPYIQNLIYFFDYLVF 275
>U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical
protein C32E8.9 protein.
Length = 268
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/99 (22%), Positives = 46/99 (46%)
Frame = +2
Query: 146 GLMGAGIVQVSIDKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRKRISSLQKDKYLSNL 325
G+MG G ++ + + ++A + G V + + N + + + L+ + +
Sbjct: 171 GIMGRGRALAAMGRANVMSAEEAKDQGYVDYVYKSEDEAENFINQVASAGLKVTRAQKAM 230
Query: 326 LPTLDYAKFKNADCVIEAVFEDINIKHKVIKELEAVVPK 442
L + K + V+EAV+ ++ + K+LEAVV K
Sbjct: 231 LNAVKIGKTEQKQ-VLEAVWNGETHRNALQKQLEAVVKK 268
>U42436-4|AAF99896.2| 297|Caenorhabditis elegans Hypothetical
protein C49H3.9 protein.
Length = 297
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/61 (21%), Positives = 29/61 (47%)
Frame = +2
Query: 272 VKRKRISSLQKDKYLSNLLPTLDYAKFKNADCVIEAVFEDINIKHKVIKELEAVVPKHCI 451
VK+ + ++ ++YLS +LP + F + ++ + E + H+ +L P I
Sbjct: 84 VKKDCVKCIECEQYLSTVLPNICKVSFNVYNSSLQDIHEKMTTAHRTTCKLRCGAPPFRI 143
Query: 452 I 454
+
Sbjct: 144 V 144
>Z83222-1|CAB05712.1| 410|Caenorhabditis elegans Hypothetical
protein E01B7.1 protein.
Length = 410
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -3
Query: 189 PLSIDTCTIPAPIKP-APRTPIVF 121
P S+ + T PAP+KP AP TP +F
Sbjct: 368 PPSLPSSTPPAPLKPVAPPTPPIF 391
>AF047662-5|AAC04440.1| 385|Caenorhabditis elegans Hypothetical
protein T22B2.3 protein.
Length = 385
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 143 HQEHQSFLHQLGIFRTYSSYILFV 72
+Q H+ FL ++GIFRT +Y F+
Sbjct: 312 NQNHEFFLCRVGIFRTSYNYSCFI 335
>Z81496-11|CAB04069.2| 448|Caenorhabditis elegans Hypothetical
protein F09C6.9 protein.
Length = 448
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 281 KRISSLQKDKYLSNLLPTLDYAKFKNADCVIEAVFEDI 394
+R LQKD +L +LPTL +A C++ V EDI
Sbjct: 412 ERQQKLQKDLHLLYILPTLAHA----PKCLVIRVIEDI 445
>AY204204-1|AAO39205.1| 448|Caenorhabditis elegans nuclear receptor
NHR-116 protein.
Length = 448
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 281 KRISSLQKDKYLSNLLPTLDYAKFKNADCVIEAVFEDI 394
+R LQKD +L +LPTL +A C++ V EDI
Sbjct: 412 ERQQKLQKDLHLLYILPTLAHA----PKCLVIRVIEDI 445
>AY204196-1|AAO39199.1| 412|Caenorhabditis elegans nuclear receptor
NHR-110 protein.
Length = 412
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 329 EVDSISTYPFVEMKFFCV 276
++D STYPF EMK+F +
Sbjct: 277 DLDYCSTYPFEEMKYFFI 294
>AF016664-4|AAB66068.1| 134|Caenorhabditis elegans Hypothetical
protein D2062.7 protein.
Length = 134
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 495 AAIFVIGIALVFVAIIQCFGTTASNSLITL 406
A I G+A V V + C G +A+ ++IT+
Sbjct: 80 AKILAYGLATVIVTFVVCVGASAAATIITI 109
>AC006777-2|AAK72308.3| 326|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 110, isoform a protein.
Length = 326
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 329 EVDSISTYPFVEMKFFCV 276
++D STYPF EMK+F +
Sbjct: 191 DLDYCSTYPFEEMKYFFI 208
>AC006777-1|ABB51174.1| 424|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 110, isoform b protein.
Length = 424
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 329 EVDSISTYPFVEMKFFCV 276
++D STYPF EMK+F +
Sbjct: 289 DLDYCSTYPFEEMKYFFI 306
>AC006665-3|AAF39905.1| 605|Caenorhabditis elegans Hypothetical
protein H27M09.3 protein.
Length = 605
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/101 (19%), Positives = 41/101 (40%)
Frame = +2
Query: 173 VSIDKGYNVVMKDATNAGLYRGVGQIQTGLSNAVKRKRISSLQKDKYLSNLLPTLDYAKF 352
+ D+ + + D TN + V Q+ + S +IS K + +PT +
Sbjct: 264 MQFDRSFILASMDKTNKP-EKAVQQLTSKSSEVSITPQISETAKSSFSKEPIPTQHPMEV 322
Query: 353 KNADCVIEAVFEDINIKHKVIKELEAVVPKHCIIATNTSAI 475
+ + E ++I+ + E+ VVP+ I T ++
Sbjct: 323 GEEPVIEHSAEESVHIEPPNVTEIREVVPQITIQPTRQDSV 363
>CU457741-8|CAM36349.1| 544|Caenorhabditis elegans Hypothetical
protein C42C1.8 protein.
Length = 544
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 98 FGKSQVDVKTIGVLGAGLMGAGIVQVSID--KGYNVVMKDATNAGLYRGVG 244
+G + + ++G G++GA + + +D K Y M N + GVG
Sbjct: 327 YGNQVAGICAVLMIGCGMIGATVASIYVDKHKNYRTAMIVLMNFAVIFGVG 377
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,884,314
Number of Sequences: 27780
Number of extensions: 253161
Number of successful extensions: 749
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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