Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332B07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    26   3.9  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   5.2  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.0  

>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -3

Query: 348 HGPSWQDSVVSFEMRMISVQASHGVQPTDLRCFDMRPSGNICVV 217
           HG  +    VS   ++I+   +  +QP +    ++     ICVV
Sbjct: 421 HGAMYLHPSVSLPEKLITTAKAQKIQPDEFYAIELLKRSGICVV 464


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 456 VSDWSCLQLPSTYSYHFITFVANIFLPSGSVDLFTMHGPSWQDSV 322
           V  WS  ++PST   H +  V+   L S S ++  +  P + D V
Sbjct: 727 VLSWSLPEVPSTVRRHHVREVSAYGLDSYSFNMSYLEAPIYFDFV 771


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 435 QLPSTYSYHFITFVANIFLPSGSVDLF 355
           + P   +   +T   NIFL  GSV LF
Sbjct: 519 KFPEALNSRLVTDFLNIFLERGSVQLF 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,490
Number of Sequences: 5004
Number of extensions: 37293
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)