Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332B07f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68749-5|CAC35817.1| 712|Caenorhabditis elegans Hypothetical pr... 52 2e-07
Z68219-6|CAC35826.1| 712|Caenorhabditis elegans Hypothetical pr... 52 2e-07
AF051403-2|AAC28323.1| 712|Caenorhabditis elegans fibulin-1 iso... 52 2e-07
AF051402-1|AAC28322.1| 712|Caenorhabditis elegans fibulin-1 iso... 52 2e-07
AB212860-1|BAD98165.1| 712|Caenorhabditis elegans fibulin-1C pr... 52 2e-07
AL117193-11|CAB55000.1| 174|Caenorhabditis elegans Hypothetical... 30 0.87
Z75955-2|CAB00112.1| 355|Caenorhabditis elegans Hypothetical pr... 29 1.5
AC006674-1|AAK68390.1| 388|Caenorhabditis elegans Nuclear hormo... 29 2.7
U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical pr... 27 8.1
>Z68749-5|CAC35817.1| 712|Caenorhabditis elegans Hypothetical
protein F56H11.1a protein.
Length = 712
Score = 52.4 bits (120), Expect = 2e-07
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Frame = -3
Query: 519 CPTGYRLES--KHRCXRIQRPCLVSDWSCLQLPSTYSYHFITFVANIFLPSG--SVDLFT 352
CPT Y +S K+RC R C + + C ++P +Y FI+ + + S ++ LF
Sbjct: 551 CPTNYIHDSLNKNRCNRQPSACGLPE-ECSKVPLFLTYQFISLARAVPISSHRPAITLFK 609
Query: 351 MHGPSWQDSVVSFEMRM-ISVQASHGVQPTDLRCFDMR--PSGNICVVSLLCSLGGPQVA 181
+ P+ D+ V+FE+++ ++ + V P F ++ N VV+L SL GPQ
Sbjct: 610 VSAPNHADTEVNFELQLKTTIVGAPNVLPAIRANFLLQKGEKRNSAVVTLRDSLDGPQTV 669
Query: 180 ELELTMSLYQRSQFAGSAVARL 115
+L+L + + ++ + + A L
Sbjct: 670 KLQLLLRMSKKGKNFNTYAANL 691
>Z68219-6|CAC35826.1| 712|Caenorhabditis elegans Hypothetical
protein F56H11.1a protein.
Length = 712
Score = 52.4 bits (120), Expect = 2e-07
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Frame = -3
Query: 519 CPTGYRLES--KHRCXRIQRPCLVSDWSCLQLPSTYSYHFITFVANIFLPSG--SVDLFT 352
CPT Y +S K+RC R C + + C ++P +Y FI+ + + S ++ LF
Sbjct: 551 CPTNYIHDSLNKNRCNRQPSACGLPE-ECSKVPLFLTYQFISLARAVPISSHRPAITLFK 609
Query: 351 MHGPSWQDSVVSFEMRM-ISVQASHGVQPTDLRCFDMR--PSGNICVVSLLCSLGGPQVA 181
+ P+ D+ V+FE+++ ++ + V P F ++ N VV+L SL GPQ
Sbjct: 610 VSAPNHADTEVNFELQLKTTIVGAPNVLPAIRANFLLQKGEKRNSAVVTLRDSLDGPQTV 669
Query: 180 ELELTMSLYQRSQFAGSAVARL 115
+L+L + + ++ + + A L
Sbjct: 670 KLQLLLRMSKKGKNFNTYAANL 691
>AF051403-2|AAC28323.1| 712|Caenorhabditis elegans fibulin-1
isoform C precursor protein.
Length = 712
Score = 52.4 bits (120), Expect = 2e-07
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Frame = -3
Query: 519 CPTGYRLES--KHRCXRIQRPCLVSDWSCLQLPSTYSYHFITFVANIFLPSG--SVDLFT 352
CPT Y +S K+RC R C + + C ++P +Y FI+ + + S ++ LF
Sbjct: 551 CPTNYIHDSLNKNRCNRQPSACGLPE-ECSKVPLFLTYQFISLARAVPISSHRPAITLFK 609
Query: 351 MHGPSWQDSVVSFEMRM-ISVQASHGVQPTDLRCFDMR--PSGNICVVSLLCSLGGPQVA 181
+ P+ D+ V+FE+++ ++ + V P F ++ N VV+L SL GPQ
Sbjct: 610 VSAPNHADTEVNFELQLKTTIVGAPNVLPAIRANFLLQKGEKRNSAVVTLRDSLDGPQTV 669
Query: 180 ELELTMSLYQRSQFAGSAVARL 115
+L+L + + ++ + + A L
Sbjct: 670 KLQLLLRMSKKGKNFNTYAANL 691
>AF051402-1|AAC28322.1| 712|Caenorhabditis elegans fibulin-1
isoform C precursor protein.
Length = 712
Score = 52.4 bits (120), Expect = 2e-07
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Frame = -3
Query: 519 CPTGYRLES--KHRCXRIQRPCLVSDWSCLQLPSTYSYHFITFVANIFLPSG--SVDLFT 352
CPT Y +S K+RC R C + + C ++P +Y FI+ + + S ++ LF
Sbjct: 551 CPTNYIHDSLNKNRCNRQPSACGLPE-ECSKVPLFLTYQFISLARAVPISSHRPAITLFK 609
Query: 351 MHGPSWQDSVVSFEMRM-ISVQASHGVQPTDLRCFDMR--PSGNICVVSLLCSLGGPQVA 181
+ P+ D+ V+FE+++ ++ + V P F ++ N VV+L SL GPQ
Sbjct: 610 VSAPNHADTEVNFELQLKTTIVGAPNVLPAIRANFLLQKGEKRNSAVVTLRDSLDGPQTV 669
Query: 180 ELELTMSLYQRSQFAGSAVARL 115
+L+L + + ++ + + A L
Sbjct: 670 KLQLLLRMSKKGKNFNTYAANL 691
>AB212860-1|BAD98165.1| 712|Caenorhabditis elegans fibulin-1C
protein.
Length = 712
Score = 52.4 bits (120), Expect = 2e-07
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Frame = -3
Query: 519 CPTGYRLES--KHRCXRIQRPCLVSDWSCLQLPSTYSYHFITFVANIFLPSG--SVDLFT 352
CPT Y +S K+RC R C + + C ++P +Y FI+ + + S ++ LF
Sbjct: 551 CPTNYIHDSLNKNRCNRQPSACGLPE-ECSKVPLFLTYQFISLARAVPISSHRPAITLFK 609
Query: 351 MHGPSWQDSVVSFEMRM-ISVQASHGVQPTDLRCFDMR--PSGNICVVSLLCSLGGPQVA 181
+ P+ D+ V+FE+++ ++ + V P F ++ N VV+L SL GPQ
Sbjct: 610 VSAPNHADTEVNFELQLKTTIVGAPNVLPAIRANFLLQKGEKRNSAVVTLRDSLDGPQTV 669
Query: 180 ELELTMSLYQRSQFAGSAVARL 115
+L+L + + ++ + + A L
Sbjct: 670 KLQLLLRMSKKGKNFNTYAANL 691
>AL117193-11|CAB55000.1| 174|Caenorhabditis elegans Hypothetical
protein Y105C5A.22 protein.
Length = 174
Score = 30.3 bits (65), Expect = 0.87
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = -2
Query: 454 VRLVVSAAAQYIQLS-LHNVRRKHIPAFGKRGPIHDARSFVARLCGQLRNENDKRSSLTR 278
+++++ A +Q+S LH H FGK P +R RLC + +R R
Sbjct: 69 MQIIIIGLAPILQISYLHRSAVGHRDTFGKAAPNFGSRIVSLRLCSAVFGRRKERRKKMR 128
Query: 277 SATNRFAMFRHAS 239
F+ R S
Sbjct: 129 KIGRNFSHDRQQS 141
>Z75955-2|CAB00112.1| 355|Caenorhabditis elegans Hypothetical
protein R07B7.3 protein.
Length = 355
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -2
Query: 283 TRSATNRFAMFRHASVGQYLRSVATVLTGRPSSG*IRTHDVPVPKEPIR 137
T +A FA+ R+ + Q ++ V T++ RP + +RT V + P++
Sbjct: 133 TLAARRNFALKRNVTAAQVIQPVRTIIQQRPITAPVRTIVQHVRQAPVK 181
>AC006674-1|AAK68390.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 119 protein.
Length = 388
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = +2
Query: 212 SDTTQILPDGRMSKHRKSVGCTPCEAXXXXXXXXXXXXESCHEGPCIVNR 361
SDT ++ DG H V C C+ H G C+V+R
Sbjct: 21 SDTCKVCGDGNAKTHYGVVTCFGCKGFFRRTLKRPSEYTCRHNGHCVVDR 70
>U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical
protein T13C2.6b protein.
Length = 911
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Frame = -1
Query: 488 IDAQEYRDHAWCQIGRVCSCPVHTA--ITS*RSS-QTYSCLREAW 363
ID Q D C I VC H + S RSS + + C+ W
Sbjct: 56 IDCQNEEDEKNCPISEVCGAEEHKCGEVKSARSSLERFKCIPNKW 100
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,325,649
Number of Sequences: 27780
Number of extensions: 227986
Number of successful extensions: 482
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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