Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332B06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M... 52 5e-08
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 34 0.011
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 33 0.026
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 32 0.045
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 30 0.18
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 30 0.24
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 29 0.56
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 28 0.97
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 27 1.3
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 1.3
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.2
SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce... 26 3.0
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.0
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 3.0
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 26 3.0
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 3.0
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 26 3.0
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 26 3.9
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 5.2
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 5.2
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 25 6.8
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 6.8
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 25 6.8
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 6.8
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 25 9.0
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 25 9.0
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.0
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 25 9.0
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 9.0
>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
3|||Manual
Length = 325
Score = 52.0 bits (119), Expect = 5e-08
Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Frame = +1
Query: 184 LQADFEGRNPEDSDFHGIKQLLRQL--FLKSNVDLGGLAQIIISQNYIGSVVKQCLXXXX 357
+ DFE +P+ DFH K LL+QL + +NV+L LA +I+SQ +GS VK
Sbjct: 69 INVDFEFFDPQPIDFHAFKNLLKQLLGYDHTNVNLSALADLILSQPLLGSTVK------- 121
Query: 358 XXXXXXXXXXXXVFGVTTVVNITKRKNEPSVAQIRE-LLTKLSQENA 495
+ + +V+N+ R++EP + Q+ ++++L++ N+
Sbjct: 122 -----VDGNNSDPYAMLSVINLNTRRDEPVIKQLTSYIISRLAKSNS 163
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 34.3 bits (75), Expect = 0.011
Identities = 18/60 (30%), Positives = 38/60 (63%), Gaps = 5/60 (8%)
Frame = +1
Query: 61 KMPNKK----NKEIDTNSES-EKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 225
++P KK +++ +++SES E+E+++ SE+DS+ + E E +++ E + E+SD
Sbjct: 68 EVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESD 127
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 33.1 bits (72), Expect = 0.026
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 46 FVYFAKMPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGN 165
F +F+K+PN K ++ D+ S DS + +D D+ N
Sbjct: 26 FGFFSKIPNVKQEKSDSTLSSSSNHDSNHDTPADVDNSSN 65
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 32.3 bits (70), Expect = 0.045
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 88 IDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHG 234
+ +++ E+E++ E + +FD +G E+E + D +G D D G
Sbjct: 170 VQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEG 218
Score = 28.3 bits (60), Expect = 0.73
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +1
Query: 70 NKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPE 216
++ +E D E ++E++ + D D + DG+ GE + + E E
Sbjct: 184 DEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEEEE 232
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 30.3 bits (65), Expect = 0.18
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 7/68 (10%)
Frame = +1
Query: 85 EIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQAD--FEGR--NPEDSDFH--GIKQ- 243
+I T+++ +K ++ G E SD D DGNY+ K L+++ +G+ N + S+F G+ Q
Sbjct: 22 DIATDNQKDKHENVG-ENVSDED-DGNYIASKLLESNRRTKGKKGNGKASNFQSMGLNQT 79
Query: 244 LLRQLFLK 267
LLR +F K
Sbjct: 80 LLRAIFKK 87
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 29.9 bits (64), Expect = 0.24
Identities = 13/56 (23%), Positives = 31/56 (55%)
Frame = +1
Query: 85 EIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHGIKQLLR 252
E+D + ++K++D + ++++ ++D N E++ + D E ED G ++ R
Sbjct: 84 EVDNVNNNDKKEDEDNVEENEEEADANEEEEEDEEDDEEDEEDEDESGGGRRKRAR 139
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 0.56
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 235 YRGSHYLLGYVLRNQPVALFHRHSCRLNQNQNLFRCL 125
+ S L Y+LR+ P + F+R+S + N N FR L
Sbjct: 9 FTSSSSLPCYILRHLPFSNFNRYSTASHDNVNAFRLL 45
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 0.97
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 70 NKKNKEIDTNSESEKEQDSGSEKDSD 147
+ NKE N+E KEQ+ E D D
Sbjct: 163 HSNNKEAHPNTEENKEQEDNEEDDED 188
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 100 SESEKEQDSGSEKDSDFDSD 159
SESE+E+ S SE D D D D
Sbjct: 239 SESEEEESSESESDEDEDED 258
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.3
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +1
Query: 58 AKMPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHGI 237
A+ PN K+ K DS E D++ S GNY + EL D + + F
Sbjct: 221 AQNPNNKSDYEKEYMALRKRYDSNEEPDTEALSQGNYT-QFELSIDKADVSFSFARFLNG 279
Query: 238 KQLLRQLFLK 267
K ++++L LK
Sbjct: 280 KGIVKELQLK 289
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/55 (21%), Positives = 24/55 (43%)
Frame = +1
Query: 61 KMPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 225
K+ KK D++SES + S+ + + V + E + + + DS+
Sbjct: 155 KIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSE 209
>SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 104
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 37 TSSFVYFAKMPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGN 165
T S V M KK+K + K +S S+ DSD DSD +
Sbjct: 49 TVSTVDNEHMNKKKSKVCCIFHKQRKFDESSSDSDSDSDSDSS 91
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = +1
Query: 91 DTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHGIKQLLRQLFL 264
D E E + D ++D D D D N L + +F +K+ L QL++
Sbjct: 200 DDEVEEEDDDDDDEDEDEDEDEDNNNNNRWLLIEQYPSDIVAYENFVSLKRKLTQLYV 257
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 106 SEKEQDSGSEKDSDFDSDG-NYVGEKELQADFEGRN 210
+E + GSE DSD DSD + V +LQ + RN
Sbjct: 434 NEPSDEIGSENDSDSDSDSDSSVPLSQLQKKSQQRN 469
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 473 VSNSLICATLGSFFLL-VIFTTVVTPKT 393
+S+S IC+ +G FF L + +++P+T
Sbjct: 324 ISDSTICSLIGGFFFLRFVNPAIISPQT 351
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +1
Query: 55 FAKMPNKKNKEIDTN----SESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEG 204
F PN K+ ++ + S+S K S E +S FD G + + +ADF G
Sbjct: 85 FLAPPNDKDSPVNQSPWKRSDSSKRSSSQDEFESLFDRYGQLSLKDDGKADFRG 138
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 79 NKEIDTNSESEKEQDSGSEKDSDFDS 156
N ++ + ES +++DS S+ DS+ +S
Sbjct: 90 NSSLENDEESSQQEDSSSKSDSEEES 115
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +1
Query: 103 ESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHGIKQLLRQL 258
+ E ++ G E+DS FDSD + K + +D G + ED + ++ + R+L
Sbjct: 96 DDEAKECEGEEEDSVFDSDEEH-EVKPMFSDDSG-DEEDLELANMEAMSRKL 145
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/50 (20%), Positives = 23/50 (46%)
Frame = +1
Query: 73 KKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDS 222
K++ + D + ++D E ++ DG + +Q++ + NP S
Sbjct: 278 KESLDADKELATNDQEDDEEENQAETQKDGAISNNENMQSEVQTTNPSAS 327
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = +1
Query: 70 NKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPED 219
++ + EID + +S EQ S +EK + + D N EK+++++ R PED
Sbjct: 37 SRVSDEIDEH-DSIPEQ-SNTEKSIEIN-DKNLEAEKDIESNLSLRPPED 83
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1258
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 518 INSLVLGSAFS*DSFVSNSLICATLGSFFLLVIFTTV 408
I + VLG A + + + ATLGSF L ++F +
Sbjct: 1096 ILATVLGKAALISNHWTQYTVIATLGSFLLWIVFMPI 1132
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 205 RNPEDSDFHGIKQLLRQ--LFLKSNVDLGGLAQIIISQNYIGSVV 333
R+P D FH I+++L + LF + + +GSV+
Sbjct: 745 RDPNDPQFHPIREILEKPMLFQLKKIGFSAILYFAFIIGCVGSVI 789
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 154 SDGNYVGEKELQADFEGRNPEDSDFH 231
SD + EK +A F RNP+ +DFH
Sbjct: 6 SDLSLAKEKS-EAQFIARNPKSNDFH 30
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 73 KKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDS 222
KK TNS ++ + + +KD +++ N +K+ +F N DS
Sbjct: 54 KKLLREKTNSGAKLAEKNSDDKDQLTENNDNLYNDKKSNGNFYDTNKTDS 103
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 240 AATEATVSEIKC*PWRASPNYYIT 311
AA E +E+KC W + NY T
Sbjct: 372 AALEGHENEVKCIAWSCNGNYLAT 395
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 24.6 bits (51), Expect = 9.0
Identities = 22/87 (25%), Positives = 38/87 (43%)
Frame = +1
Query: 61 KMPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHGIK 240
K+P +K+ S+ + SGS D++G G+K + +G N D K
Sbjct: 74 KIPLISSKQFSVTSKRSQNGSSGSNS----DANGRKNGQKNDDSKKKGLNGNDP-----K 124
Query: 241 QLLRQLFLKSNVDLGGLAQIIISQNYI 321
++ ++ L N LGG+ I N +
Sbjct: 125 KVF-EIALNGNTILGGILVAYILYNVL 150
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 257 SCLSSCLIPWKSLSSGLRPSKSACSSFSPT*LPSESKSESFSLP 126
S LSS L S S+G +SA +SF+P+ + ES S+P
Sbjct: 200 SNLSSSLRS-SSKSAGFSLFESASNSFTPSSFIESANMESLSIP 242
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = -1
Query: 272 FDFRNSCLSSCLIPWKSLSSGLRPSKSACSSFSPT 168
F ++ C SC + + P+++A S+ +PT
Sbjct: 140 FSYKAGCSDSCSVTVSGTGELIGPTRNAHSNLTPT 174
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 70 NKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYV 171
N+ + E + S S+ + D G DS D+ NY+
Sbjct: 200 NESDSESEIES-SDSDHDDGENSDSKLDNLRNYI 232
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.133 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,766,535
Number of Sequences: 5004
Number of extensions: 30616
Number of successful extensions: 153
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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