Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332B05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   3.0  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   6.8  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   6.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   9.0  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   9.0  

>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 194 VLNAKRLTRNANLLSRRS*YLTCSQNK 274
           VL +KRL R++ + S    YLTC  NK
Sbjct: 278 VLISKRLYRSSEVASHTLTYLTCVANK 304


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 267 WEQVKYQDLRDNKLAFLVKRLAFKT 193
           W + ++Q++++    FL+K + FKT
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKT 354


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
            Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 157  CNFHSQQSANPVYKSETFIFCCINLSLYSESVFVTYKFKTLLFHI 23
            CN H     N V+K+ + +F  +   +   +V V   F   LF++
Sbjct: 874  CNAHYHAGCNDVFKARSAVFAVVTFCILIMAVEVK-NFDNSLFNL 917


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 151 FHSQQSANPVYKSETFIFCCINLSLYSESVFVTYKFKTLLFHIIFK 14
           FH  +S + + K ++ +  C+NL+ Y E      K    L+++  K
Sbjct: 506 FHIIRSFSELTKFQSSLEGCLNLAAYYEDAEFPQKLSNHLYNLCVK 551


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 79  LYSESVFVTYKFKTLLFHIIFKYIFF 2
           L + + F++Y F++L F +  KY  F
Sbjct: 419 LEASATFISYPFQSLAFIVCLKYCSF 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,795,299
Number of Sequences: 5004
Number of extensions: 31251
Number of successful extensions: 50
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)