Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332B05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    24   1.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   1.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.5  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.5  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 61  KHSQNINLN*YNKR*RFRSYILDL 132
           K+S   N N YNK+  +++YI+++
Sbjct: 90  KYSNYNNYNNYNKKLYYKNYIINI 113


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 37  RF*TYT*QKHSQNINLN*YNKR*RFRSYILDL 132
           ++  Y    +  N N N YNK+  +++YI+++
Sbjct: 323 KYSNYNNYNNYNNNNYNNYNKKLYYKNYIINI 354


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 73  NINLN*YNKR*RFRSYILDL 132
           N N N YNK+  +++YI+++
Sbjct: 105 NYNNNNYNKKLYYKNYIINI 124


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 49  YT*QKHSQNINLN*YNKR*RFRSYILDL 132
           Y    ++   N N YNK+  +++YI+++
Sbjct: 322 YNYNNNNYKYNYNNYNKKLYYKNYIINI 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,059
Number of Sequences: 438
Number of extensions: 1929
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)