Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332B04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   1.3  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    26   3.9  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    26   3.9  
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    25   6.8  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   9.0  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.0  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 81   LHSLRSGKRTQGPPTAVNAQHLAALA 158
            LH  RSG+    P T ++ +HLA LA
Sbjct: 1094 LHESRSGRVYMSPLTEISPEHLARLA 1119


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 24  VQQKQLSEAELYIKLHLGVLH 86
           +Q++QL E   Y+ LHL +LH
Sbjct: 48  LQKRQLYEIITYVTLHLSMLH 68


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 219 EKLQECLNRL-GQAVQVSLANGCVYGNVNNLLASLDTLPENRLLR 350
           + L+ C   L  +++++ + N C  G  +  +AS+ +L   RLL+
Sbjct: 92  QALKHCRESLPNKSIEIDMGNQCASGLADVTVASVFSLKNERLLK 136


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -2

Query: 394 HNIRQMFC*WVRMTMRRRRFSGSVSREARRLLTLPYTQPL 275
           HN R+ F  W   T  R+  S  VS   R   TLPY +PL
Sbjct: 94  HNPRERF--WAART--RQIHSAHVSTYDRLWSTLPYLRPL 129


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 421  SLGLIEPCTEVWCNYVLVCDQIHCNKC 501
            SL L E  + VW NY  +C Q H  +C
Sbjct: 956  SLLLNERSSGVWANYGALCIQNHDVEC 982


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -1

Query: 266 YLHRLPESVQT 234
           YLHRLPES+ T
Sbjct: 266 YLHRLPESIPT 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,593
Number of Sequences: 5004
Number of extensions: 41845
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)