Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332B04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908...    29   1.7  
09_02_0209 + 5809753-5810077,5810866-5810987                           27   9.1  
07_03_0583 - 19684388-19684498,19685083-19685216,19685765-196858...    27   9.1  
03_06_0617 - 35124114-35124148,35124243-35124335,35124415-351249...    27   9.1  
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148...    27   9.1  

>12_01_0919 -
           9086879-9087064,9087842-9087923,9088357-9089553,
           9089598-9089961,9090086-9090188,9090234-9090479
          Length = 725

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -1

Query: 251 PESVQTFLKFLIIAQLKTSCEDVMRVRLH-DRRQRGEVLSVNCSRRALGSFAG 96
           PE ++ F  +L++    T+ + V   + + +RR+ GE+L+ N +R    S  G
Sbjct: 83  PELIRNFHVYLLVGNGATAIKTVAEEKSYVERRREGELLAPNTARAKFSSQCG 135


>09_02_0209 + 5809753-5810077,5810866-5810987
          Length = 148

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +3

Query: 201 LKLSN--DEKLQECLNRLGQAVQVSLANGCVYGNV 299
           ++LSN  +  L E + + GQA  + LA+G V+G V
Sbjct: 1   MELSNLRNSGLDEVVMKTGQAAGIGLASGTVWGGV 35


>07_03_0583 -
           19684388-19684498,19685083-19685216,19685765-19685888,
           19685982-19686251,19686961-19687155,19687236-19687328,
           19687411-19687539,19687646-19689277
          Length = 895

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = -3

Query: 447 CTRLNE--SKTK-TCIQSQNLITFVKCSADGFV*LCGGDDSQAVCPGRPEGC*RCRTRSR 277
           C  +NE   KTK T   S NL +    + + F  L    D Q+VC  R  GC    TR  
Sbjct: 746 CNCVNEVPMKTKSTFFHSINLGSVEGTTLESFSELLKAVDKQSVCDFRNGGCGHRITRYL 805

Query: 276 W 274
           W
Sbjct: 806 W 806


>03_06_0617 -
           35124114-35124148,35124243-35124335,35124415-35124919,
           35125039-35125238,35125514-35125604,35125699-35126769
          Length = 664

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 239 EPTRASGAGIPSQRLRVRQRQQPSGLPGHTA 331
           EP R +     S +LR R++ Q  G+P HTA
Sbjct: 488 EPERDARETGTSMKLRNRRKLQKDGIPEHTA 518


>02_01_0003 +
           13079-13610,14005-14312,14364-14549,14620-14707,
           14807-14887,14980-15044,15357-15497,15578-15694,
           15995-16237,16326-16383,18127-18224
          Length = 638

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -3

Query: 354 LCGGDDSQAVCPG--RPEG-C*RCRTRSRWLGIPAPLARVGSDIPEV 223
           L G  ++ A  P    PEG C R R R RWLG+   LA V  D+  V
Sbjct: 48  LLGFGEAAAALPAVDDPEGPCARQRRR-RWLGVVVKLALVVMDVEAV 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,498,509
Number of Sequences: 37544
Number of extensions: 301445
Number of successful extensions: 777
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)