Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332B04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    30   0.87 
AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical...    28   3.5  
U97189-7|AAK68257.3|  782|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U28737-6|AAL02486.1|  566|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z77737-1|CAB01296.1|  105|Caenorhabditis elegans PP1-like Ser/Th...    27   6.2  
Z22179-14|CAI06052.1|  443|Caenorhabditis elegans Hypothetical p...    27   6.2  
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical
           protein C31H1.1 protein.
          Length = 693

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
 Frame = +3

Query: 69  HLGVLHSLRSGKRTQGPPTAVNAQHLAALAPIVQTYAHDVLTRGLKLSNDEKLQECLNRL 248
           H   + S  SGK TQ  PT ++++ L   + I    A      G + S D K+    +  
Sbjct: 127 HWKRIDSFTSGKSTQSIPTTISSKPLTIPSSISANTASIPPNHGSEFSKDFKMSSSSSMT 186

Query: 249 GQAVQVSLANGCV-YGNVNNLLASLDTLPENRLLRIVIRTHQQNI 380
            +  +    N        + +L+SL    ENR +R+ +    + I
Sbjct: 187 SEYSETIHGNSLASLAPSSQILSSLVETTENREMRLCLGKQMEGI 231


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical protein
            W05B2.2 protein.
          Length = 1278

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 414  CIQSQNLITFVKCSADGFV*LCGGDDSQAVCPGR 313
            C  + +   F KC+A G V +C G + Q +CP R
Sbjct: 961  CTTTDDCPEFHKCTAQGSVSICCGLEIQDICPTR 994


>AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical
           protein Y48B6A.11 protein.
          Length = 922

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 348 GGDDSQAVCPGRPEGC*RCRTRS 280
           GGDD      G P  C RCR R+
Sbjct: 611 GGDDDDVTSSGEPWRCPRCRNRT 633


>U97189-7|AAK68257.3|  782|Caenorhabditis elegans Hypothetical
           protein C48B6.8 protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 204 KLSNDEKLQECLNRLGQAVQVSLANGCVYGNVNNLLASLDTL 329
           K   D K  +C  +  +A++    N C  GN+ N L SLD L
Sbjct: 598 KKKEDSKKIDCRTKEVRAIEALSLNSCKTGNMGN-LPSLDAL 638


>U28737-6|AAL02486.1|  566|Caenorhabditis elegans Hypothetical
           protein F14B8.7 protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 191 EDVMRVRLHDRRQRGEVLSVNCSRRALGSFAG 96
           E + R ++  + ++  +L ++CSR A G FAG
Sbjct: 305 ERLKREQMEKKMKKRSILKIDCSRTAEGLFAG 336


>Z77737-1|CAB01296.1|  105|Caenorhabditis elegans PP1-like Ser/Thr
           protein phosphataseprotein.
          Length = 105

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 228 QECLNRLGQAVQVSLANGCVYGNVNNLLASLDTL 329
           Q C NR+  A  +S    C++G ++  L +LDT+
Sbjct: 56  QSCFNRMPMAGLISKKVLCMHGGLSPELVNLDTI 89


>Z22179-14|CAI06052.1|  443|Caenorhabditis elegans Hypothetical
           protein F58A4.14 protein.
          Length = 443

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 186 VLTRGLKLSNDEKLQECLNRLGQAVQVSLANGCVYGNVN-NLLA 314
           +LT G  + N       LN+   A  VS  NGC++ N+   LLA
Sbjct: 270 ILTIGSIMQNHSDHDVALNKYRVAADVSDYNGCLWNNIGIGLLA 313


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
            C23F12.1a protein.
          Length = 2329

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 81   LHSLRSGKRTQGPPTAVNAQHLAALAPIVQTYA 179
            LH L +GK  +G P AV+A   A LA ++   A
Sbjct: 2044 LHILWNGKHVKGSPFAVSADTSAHLADLIDVDA 2076


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 81   LHSLRSGKRTQGPPTAVNAQHLAALAPIVQTYA 179
            LH L +GK  +G P AV+A   A LA ++   A
Sbjct: 2462 LHILWNGKHVKGSPFAVSADTSAHLADLIDVDA 2494


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,294,316
Number of Sequences: 27780
Number of extensions: 256853
Number of successful extensions: 711
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)