Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332B02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    33   0.034
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   5.2  
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo...    25   6.8  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   9.0  

>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 32.7 bits (71), Expect = 0.034
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 3/119 (2%)
 Frame = +1

Query: 10  MSLQWTIIATFLYTEIAVVLLLTLPIASPSR---WQKFFKSKFLAYISGQASIYFXXXXX 180
           M++ + I+   L  EI   ++L+LP+    R         S F   +     I       
Sbjct: 1   MTIYYMIVFMLLMVEIVSFVILSLPLPLKVRRAILNAISNSPFAGRVKHVLKITIICILI 60

Query: 181 XXXXXXXDAIREMQKYSNIEPSDHQHLDAEMQGNMRLFRAQRNFYISGFALFLLVVIRR 357
                    +R  ++Y     +      A        F AQRN Y+ G ALFL +V+ R
Sbjct: 61  LFADSVRRVVRVTKEYDLAIAAPSTTESARSGYKASQFYAQRNLYLCGSALFLSLVVNR 119


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 75  NFADSQSEQMAEVLQ-IEISSLHKRAGIYLFSDSHW 179
           N  +   E +A  LQ IE+ S+ +R  +Y   D +W
Sbjct: 22  NEEEELDEAIAAALQKIEVPSIPRRVKVYEMEDENW 57


>SPAC20G4.04c |hus1||checkpoint clamp complex protein
           Hus1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 6   NHESAMDNYRDVSLYRDRSRPPFNFADSQSEQMAEVLQIEISSLHKRAGIYLFSDSH 176
           N E       D+S +  ++R P  F   + +    V  ++ISS+ KR  I  F + H
Sbjct: 204 NPELDPSQVEDISRHPSQTRAPEEFVHMRLDSKDLVNMLKISSVAKRV-IACFCEGH 259


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 78  FADSQSEQMAEVLQIEISSLHKRAGIYLFSDSHWRASI 191
           F   Q  + A+V  I+ SSL K+  I      HW+  I
Sbjct: 122 FRKEQLRKFAKVFHIKSSSLRKKEIIERILLDHWKLRI 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,723
Number of Sequences: 5004
Number of extensions: 36371
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)