Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332B02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0317 - 7414477-7414555,7414646-7414701,7415877-7416024,741...    31   0.42 
03_05_0472 - 24655384-24655764,24655904-24656119,24656197-246563...    28   4.0  
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177...    28   5.2  
03_02_1029 - 13488535-13493037                                         28   5.2  
12_02_0900 - 24153734-24153943,24154461-24155110,24155198-241553...    27   6.9  
12_02_0437 - 19084990-19087695                                         27   6.9  
07_01_0007 - 47999-48379,48496-48711,48794-48918,49031-49220,494...    27   6.9  

>03_02_0317 -
           7414477-7414555,7414646-7414701,7415877-7416024,
           7416376-7416380,7416512-7416594,7416707-7416878
          Length = 180

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 10  MSLQWTIIATFLYTEIAVVLLLTLPIASPSRWQ 108
           M+LQW I+A  +  E AV ++LTLP     R Q
Sbjct: 1   MALQWMILACVVAAEAAVAVMLTLPAPRAVRKQ 33


>03_05_0472 -
           24655384-24655764,24655904-24656119,24656197-24656321,
           24656432-24656621,24656817-24656911,24657230-24657454,
           24657940-24658003
          Length = 431

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 308 FLCARNNLMLPCISASRCWWSDGSIFE--YFCISRIASSRHNTSTPMR 171
           F+CA     +P +SA R W    ++F   Y  I+ + S R   +TP +
Sbjct: 151 FVCALFAFGIPYLSALRIWLGLSTVFSLIYIMIAFVMSLRDGITTPAK 198


>09_04_0736 -
           19815427-19815642,19815782-19816903,19817006-19817707,
           19817808-19817855,19817959-19818201,19819035-19819391
          Length = 895

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 220 QKYSNIEPSDHQHLDAEMQGNMR 288
           ++YS I PS++ H DA+ +G++R
Sbjct: 594 RRYSMITPSNNHHRDADHRGSLR 616


>03_02_1029 - 13488535-13493037
          Length = 1500

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 33  RDVSLYRDRSRPPFNFADSQSEQMAEVLQIEISSL 137
           R V+LYR   +P   FA   S + +E+ QIE+S +
Sbjct: 494 RTVTLYRGPEQPVVFFAPPTSVRSSELHQIELSEI 528


>12_02_0900 -
           24153734-24153943,24154461-24155110,24155198-24155334,
           24156595-24157223
          Length = 541

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -2

Query: 331 VQSQICRSFSVHETISCYLAFRRRDAGGLTVQYLNIFASHELHLADIIL 185
           ++S I RSF++  TI   L F + D+  +  ++LN+  S ++  A I L
Sbjct: 404 IRSLITRSFAIVPTIIVALFFDKSDSLDVLNEWLNVLQSIQIPFALIPL 452


>12_02_0437 - 19084990-19087695
          Length = 901

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 215 RCKNIQILNRQTTSISTPKCKVT-*DCFVHRETSTYL 322
           R KN+Q L+ + TS+S   C++T   C  H   ST L
Sbjct: 626 RLKNLQTLHLRRTSVSELPCEITLLACLRHLSVSTDL 662


>07_01_0007 -
           47999-48379,48496-48711,48794-48918,49031-49220,
           49465-49559,49807-49954
          Length = 384

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 308 FLCARNNLMLPCISASRCWWSDGSIFE--YFCISRIASSRHNTSTPMR 171
           F+CA     +P +SA R W    + F   Y  I+ + S R   +TP +
Sbjct: 104 FVCALFAFGIPYLSALRIWLGFSTFFSLIYITIAFVLSLRDGITTPAK 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,920,782
Number of Sequences: 37544
Number of extensions: 239638
Number of successful extensions: 540
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)