Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332B02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF304120-1|AAG50233.1|  213|Caenorhabditis elegans 4D656 protein.     116   1e-26
AC024817-36|AAF59580.1|  213|Caenorhabditis elegans Hypothetical...   116   1e-26
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    27   8.1  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    27   8.1  

>AF304120-1|AAG50233.1|  213|Caenorhabditis elegans 4D656 protein.
          Length = 213

 Score =  116 bits (278), Expect = 1e-26
 Identities = 64/169 (37%), Positives = 90/169 (53%), Gaps = 2/169 (1%)
 Frame = +1

Query: 10  MSLQWTIIATFLYTEIAVVLLLTLPIASPSRWQKFFKSKFLAYISGQASIYFXXXXXXXX 189
           M+LQWTI+A  LY EIA+   L LP   P+ W K FKS+    ++  A IY         
Sbjct: 1   MTLQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALAKHAHIYSITFGFVLF 60

Query: 190 XXXXDAIREMQKYSNIEPSDHQHLDAEMQGNMRLFRAQRNFYISGFALFLLVVIRRLVQM 369
               D +RE  KY+ +E    +  +++   +MRLFRAQRN YISGFAL L +VI+R++ +
Sbjct: 61  ILFADGVRETMKYNGLEGQMGRTAESDATHHMRLFRAQRNLYISGFALLLWLVIQRIMTL 120

Query: 370 ISQLATLLAQSEANFXXXXXXXXXXXXLLEKQGTGEEQS--XKEIEDLR 510
           + + A L A SEA              L+    T EE +   K+IE L+
Sbjct: 121 LGRAAQLEAASEAAMRQAESATKTARTLMNSADTNEEAAGLAKQIEKLK 169


>AC024817-36|AAF59580.1|  213|Caenorhabditis elegans Hypothetical
           protein Y54G2A.18 protein.
          Length = 213

 Score =  116 bits (278), Expect = 1e-26
 Identities = 64/169 (37%), Positives = 90/169 (53%), Gaps = 2/169 (1%)
 Frame = +1

Query: 10  MSLQWTIIATFLYTEIAVVLLLTLPIASPSRWQKFFKSKFLAYISGQASIYFXXXXXXXX 189
           M+LQWTI+A  LY EIA+   L LP   P+ W K FKS+    ++  A IY         
Sbjct: 1   MTLQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALAKHAHIYSITFGFVLF 60

Query: 190 XXXXDAIREMQKYSNIEPSDHQHLDAEMQGNMRLFRAQRNFYISGFALFLLVVIRRLVQM 369
               D +RE  KY+ +E    +  +++   +MRLFRAQRN YISGFAL L +VI+R++ +
Sbjct: 61  ILFADGVRETMKYNGLEGQMGRTAESDATHHMRLFRAQRNLYISGFALLLWLVIQRIMTL 120

Query: 370 ISQLATLLAQSEANFXXXXXXXXXXXXLLEKQGTGEEQS--XKEIEDLR 510
           + + A L A SEA              L+    T EE +   K+IE L+
Sbjct: 121 LGRAAQLEAASEAAMRQAESATKTARTLMNSADTNEEAAGLAKQIEKLK 169


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +1

Query: 226  YSNIEPSDHQHLDAEMQGNMRLFRAQRNFYISGFALFLLVVIRRLVQMISQLATLL 393
            ++  EPSD+   D       +LF    N Y++ +A + L +    V + S  +T L
Sbjct: 5426 FAGAEPSDYGRADDHDDAMRKLFVMNMNSYLASYASYCLDLKGEAVSVYSACSTAL 5481


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 158  IDACPLM*ARNFDLKNFCHLLGLAIGKVK 72
            +D CP+       L++FC LL   IG VK
Sbjct: 1980 VDQCPMAEGLQQQLRDFCELLVGKIGNVK 2008


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 158  IDACPLM*ARNFDLKNFCHLLGLAIGKVK 72
            +D CP+       L++FC LL   IG VK
Sbjct: 2101 VDQCPMAEGLQQQLRDFCELLVGKIGNVK 2129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,114,246
Number of Sequences: 27780
Number of extensions: 210723
Number of successful extensions: 528
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)