Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332A11f
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.51 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   1.6  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   6.3  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   8.3  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 290  TPTKETMRNIKYKKKYNWQSYR*ERSPPDNHQVEKN 397
            TPTK+   + K KK YN++  R  R   D++ + KN
Sbjct: 1496 TPTKKGEVSSKAKKGYNYEKRRSGRQVSDSYVLNKN 1531


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 173  QYNQ*KNLMLSVCLSL*SDYTNE 105
            QY + KN +LS+C  L S YT+E
Sbjct: 1044 QYQENKNSLLSLCEGLHSTYTDE 1066


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 211 CISQ*S*RWCLRQNPVRGTEREYYLL 288
           C+ + + RWCL   P++    E+Y L
Sbjct: 556 CLLESTYRWCLSGTPMQNGVEEFYSL 581


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 364 SLLAIRLPIVLFFVFNVSHCFFCWCTINNTLSLSLS 257
           SL A+ LP VLFF+F+    F+ W  ++  + ++ +
Sbjct: 90  SLFALILPGVLFFIFS---AFWLWHHVSPAVPITFA 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,596,588
Number of Sequences: 5004
Number of extensions: 26962
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)