Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332A11f
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1361 - 25998873-25999223,25999311-25999461,25999546-259997...    30   0.89 
12_01_0386 + 3023431-3023522,3023951-3024097,3024227-3024308,302...    29   2.1  
07_03_0846 - 21983581-21986055                                         28   3.6  
11_01_0044 + 340486-340854,341855-341911,343100-343974,344065-34...    27   8.3  
08_01_1000 + 10154024-10154147,10155500-10155761,10155839-101558...    27   8.3  
03_02_0667 - 10284554-10284735,10284949-10285141,10285226-102853...    27   8.3  

>07_03_1361 -
           25998873-25999223,25999311-25999461,25999546-25999783,
           25999898-26000108,26000210-26000340,26000909-26001037,
           26001329-26002130
          Length = 670

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -1

Query: 361 LLAIRLPIVLFFVFNVSHCFFCWCTINNTLSLSLSQDFVEDTIVKI 224
           +LAI LPIV   + +   CF CW        LSLS     + I  I
Sbjct: 276 ILAIVLPIVAALLASAMICFCCWRRRTKATKLSLSYSSRSEDIQNI 321


>12_01_0386 +
           3023431-3023522,3023951-3024097,3024227-3024308,
           3024801-3024842,3024930-3024989,3025430-3027109,
           3027239-3027340,3027461-3027604,3027704-3027829,
           3027933-3028100
          Length = 880

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 288 VHQQKKQCETLNTKKSTIGSLIAKSDLLQ 374
           V Q KK C  LN + S + S  AK+DL Q
Sbjct: 149 VQQYKKLCCQLNNRSSMVASASAKNDLSQ 177


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 276 VLFIVHQQKKQCETLNTKKSTIGSLIA--KSDLLQTT 380
           VLFIV Q+ ++  TL   K+T G+LIA   SDL   T
Sbjct: 458 VLFIVFQKCRRDRTLRISKTTGGALIAFRYSDLQHVT 494


>11_01_0044 +
           340486-340854,341855-341911,343100-343974,344065-344398,
           345553-345645,345913-346062
          Length = 625

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 358 LAIRLPIVLFFVFNVSHCFFCW 293
           LAI++P+ +F +  V+ C  CW
Sbjct: 135 LAIKIPMPVFLICLVAGCSICW 156


>08_01_1000 +
           10154024-10154147,10155500-10155761,10155839-10155885,
           10155967-10155998,10156079-10156146,10156214-10156605,
           10156811-10157009,10157494-10157636,10157722-10158366,
           10158493-10158551,10158725-10158823
          Length = 689

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 89  KI*YLFHSCNQIIKINRRSTSSFFID 166
           K+ YLFH CN+++   R + +S  +D
Sbjct: 70  KVNYLFHDCNRMLSTIRTAFASVQVD 95


>03_02_0667 -
           10284554-10284735,10284949-10285141,10285226-10285307,
           10286537-10286751
          Length = 223

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 240 SSTKSCERDRERVLFIVHQQKKQCETLNTKKSTIGSL 350
           S  K C   R R +F+ +  K Q   L+T K  +GSL
Sbjct: 31  SHLKLCYNLRNRNVFVPNTNKPQLGPLHTNKPQLGSL 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,161,459
Number of Sequences: 37544
Number of extensions: 138820
Number of successful extensions: 238
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)