Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332A11f
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1...    28   4.3  
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1...    28   4.3  
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1...    28   4.3  
AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR...    28   4.3  
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.      28   4.3  
U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical p...    27   9.9  

>U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1,
           isoform c protein.
          Length = 942

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 358 LAIRLPIVLFFVFNVSHCFFCWCTINNTLSLSLSQDFVEDTIVK 227
           LA    + +FFV    H    WC +   ++   S+D VE T++K
Sbjct: 727 LAFATGVTMFFVNRKGHMLSTWCPLFTKMT---SKDVVERTLLK 767


>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
           isoform a protein.
          Length = 1409

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 358 LAIRLPIVLFFVFNVSHCFFCWCTINNTLSLSLSQDFVEDTIVK 227
           LA    + +FFV    H    WC +   ++   S+D VE T++K
Sbjct: 727 LAFATGVTMFFVNRKGHMLSTWCPLFTKMT---SKDVVERTLLK 767


>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
           isoform b protein.
          Length = 1444

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 358 LAIRLPIVLFFVFNVSHCFFCWCTINNTLSLSLSQDFVEDTIVK 227
           LA    + +FFV    H    WC +   ++   S+D VE T++K
Sbjct: 762 LAFATGVTMFFVNRKGHMLSTWCPLFTKMT---SKDVVERTLLK 802


>AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR-1
           protein.
          Length = 942

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 358 LAIRLPIVLFFVFNVSHCFFCWCTINNTLSLSLSQDFVEDTIVK 227
           LA    + +FFV    H    WC +   ++   S+D VE T++K
Sbjct: 727 LAFATGVTMFFVNRKGHMLSTWCPLFTKMT---SKDVVERTLLK 767


>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
          Length = 1409

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 358 LAIRLPIVLFFVFNVSHCFFCWCTINNTLSLSLSQDFVEDTIVK 227
           LA    + +FFV    H    WC +   ++   S+D VE T++K
Sbjct: 727 LAFATGVTMFFVNRKGHMLSTWCPLFTKMT---SKDVVERTLLK 767


>U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical
           protein F45F2.1 protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -1

Query: 367 RSLLAIRLPIVLFFVFNVSHCFF-CWCTINNTLSLSLS--QDFVEDT 236
           +  L I LP+V+FF F+ S CF   W    + +  S S  Q  +E+T
Sbjct: 385 KMFLKICLPLVVFFRFHCSVCFAEIWKVYYHLIPTSQSSRQSVIENT 431


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,729,454
Number of Sequences: 27780
Number of extensions: 148648
Number of successful extensions: 417
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)