Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332A10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...   141   5e-35
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    52   4e-08
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    28   0.73 
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    27   1.7  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    26   3.0  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    26   3.9  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   5.2  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   6.8  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.0  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    25   9.0  

>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score =  141 bits (342), Expect = 5e-35
 Identities = 72/132 (54%), Positives = 92/132 (69%), Gaps = 1/132 (0%)
 Frame = +1

Query: 91  KNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHMNT 270
           ++FSTTS R FK         IGQPL++LLK N  V+ LAL+DI    PGVAAD+ H+NT
Sbjct: 19  RSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGA-PGVAADIGHINT 77

Query: 271 PAKVSGHKGPEE-LSAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQNA 447
            + V G+   ++ L  A+  ADVV+IPAGVPRKPGMTRDDLF TNASIVRD+A +  +  
Sbjct: 78  TSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFAAGETC 137

Query: 448 PKAIVAIITNPV 483
           P+A   ++TNPV
Sbjct: 138 PEAKYLVVTNPV 149


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 52.4 bits (120), Expect = 4e-08
 Identities = 46/140 (32%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
 Frame = +1

Query: 85  GAKNFSTTSQRN--FKXXXXXXXXX--IGQPLALLLKQNPLVTRLALYDI-APVTPGVAA 249
           G+K FS  S R+  FK           +G   A  L  + L   + + D+      G A 
Sbjct: 4   GSKVFSNDSVRSSSFKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAM 63

Query: 250 DLSHMNTPAKVSGHKGPEELS--AAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDI 423
           DL+H    A    H+    L      KDA  VVI AG  +KPG TR DL   N SI ++I
Sbjct: 64  DLNH----AAPLSHETRVYLGDYKDCKDATAVVITAGKNQKPGETRMDLLKANISIFKEI 119

Query: 424 ALSIAQNAPKAIVAIITNPV 483
              + +    AI+ + TNPV
Sbjct: 120 LREVTKYTKDAILLVATNPV 139


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 441 LSNGQSNVTDNGSISVE*VITGHSRFTGYSCW 346
           L NG   + D  + SV  V+TGH+R     CW
Sbjct: 43  LVNGSVVIWDLSTFSVSRVLTGHTRAIQSVCW 74


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 69  PCCTKWCKELFHHITEEL*SGGRWCR 146
           P C  WC  ++  IT+   + G WCR
Sbjct: 319 PDCKSWCGIIYQFITDS--NVGMWCR 342


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 211 LYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAA 318
           L + APV  G A   S   +   V+G  GP ELS A
Sbjct: 12  LINSAPVILGYALQNSLQTSSVIVTGRLGPSELSVA 47


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 57  KTCRPCCTKWCKELFHHITEEL*SGGRWCRRWY 155
           K C+ C  + C+  +HHI E+L      CRR Y
Sbjct: 33  KPCQ-CGYRVCRFCWHHIKEDLNGRCPACRRLY 64


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 193 LVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAI 321
           ++ RLALY+ A V P +   +  + +  + SG+   +E SA +
Sbjct: 586 IIGRLALYNPAHVMPSLRKTIIQLLSDMEYSGNSRQKEESAQL 628


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 21/82 (25%), Positives = 33/82 (40%)
 Frame = +1

Query: 253 LSHMNTPAKVSGHKGPEELSAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDIALS 432
           +   N    VS  K PE+ S    D+D+  I   +  KPG   + L  + A++      +
Sbjct: 21  IEERNDGVTVSNAKSPEQASEESDDSDIEFI---IETKPGERAEPLGGSIATLGSTRPSA 77

Query: 433 IAQNAPKAIVAIITNPVXLYSA 498
             Q    A+    T P  L +A
Sbjct: 78  KPQVEKTAVEVKTTEPQDLSTA 99


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 138 WCRRWYRPAFGPSTEAESSGDQAGFIRHSACD 233
           WC +  +P F  +    S GD  G  R   C+
Sbjct: 260 WCGKQEKPEFVKNLVPHSCGDPCGKTRGQDCE 291


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 292 KGPEELSAAIKDADVVVIPAGVP 360
           K P+EL A +KD     +PA VP
Sbjct: 205 KDPQELFAFVKDCAHTFLPAYVP 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,238
Number of Sequences: 5004
Number of extensions: 46236
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)