Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332A09f
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    31   0.073
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    27   0.68 
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    27   0.90 
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   2.7  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    24   6.3  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    24   6.3  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    24   8.3  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    24   8.3  

>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 30.7 bits (66), Expect = 0.073
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
 Frame = -2

Query: 344 LTSSCPS-----TCGPTPGCT*SFPTRPISLFGMVKVEYIQQYVSITASGI--SSTMQSI 186
           L ++CP      T GP PG T  +PT  ++        Y     S+++S I  +ST+ + 
Sbjct: 36  LLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS-KSLSSSSILSNSTISTS 94

Query: 185 GSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTESSLRSPFTEPKTSNMAGA 24
            S      V  S + +   T+       T  S  T SS+ S  T P +S+++ +
Sbjct: 95  SSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 0.68
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -2

Query: 257 VKVEYIQQYVSITASGISSTMQSIGSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTE 78
           V  EYI++ ++   S    T+  I + +Y   +   E   + +     C RNTLLS+H  
Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVE----C-RNTLLSVHRT 199

Query: 77  SSLR 66
           +SLR
Sbjct: 200 ASLR 203


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 0.90
 Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = -1

Query: 264 RDGESRVYPAVR-VHNGERDFINDAVN 187
           ++G+  ++P+V+ +H GER+ IND V+
Sbjct: 20  KNGQILLHPSVQPLHPGERELINDIVS 46


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 234 VRVHNGERDFINDAVNRVTDVL 169
           V   NG R+++ DAV R  DV+
Sbjct: 499 VESRNGRREYVQDAVRRHGDVI 520


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 314 PTPGCT*SFPTRPISLFGMVKVEYIQQYVSITASGISSTMQS 189
           P P  T S+P+  ISL   + VE ++ Y S      S+  +S
Sbjct: 814 PLPEHTTSYPSTQISLAPSIHVEGLETYSSSERKDSSNKYKS 855


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 234 VRVHNGERDFINDAVNRVTDVLS 166
           ++  NG   F+N AVNR++ VL+
Sbjct: 1   MKEENGFAGFLNTAVNRLSGVLN 23


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = -2

Query: 152 SENAIKIITVAL*CKRNTLLSMHTESSLRSP------FTEPKTSNMAGAR 21
           S NA+ + T+ +  +R+  +S  ++SSL SP        +P   NMA A+
Sbjct: 507 SSNALYLATLPMGYERSNSVSYCSDSSLSSPLPDDNMLQDPHALNMAYAK 556


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 197 SLMKSRSPLWTRTAGYTLLSPSRTDLSAASERITCNPASAHMSKDK 334
           SL  +    W + A  T  S S TDL  AS +    PAS   S ++
Sbjct: 240 SLKHTDPTKWQKHAKRTASSNSLTDLLHASNQTFMAPASGLQSTEE 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,023
Number of Sequences: 5004
Number of extensions: 26132
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)