Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332A09f
(363 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 29 1.5
01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890 29 1.5
12_02_1279 + 27510605-27513301 28 2.6
07_03_1506 - 27161056-27161454 27 3.4
03_05_0865 - 28365430-28367640 27 3.4
03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,945... 27 4.5
01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147... 27 4.5
01_03_0104 - 12598165-12598257,12598568-12598627,12598958-12600124 27 4.5
05_06_0083 + 25429958-25429967,25431035-25431144,25431286-254313... 27 6.0
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876... 26 7.9
>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
Length = 740
Score = 28.7 bits (61), Expect = 1.5
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -1
Query: 345 FNFVLSFDMWADAGLHVILSD--AADKSVRDGESRVYPAVR--VHNGERDFINDAVN 187
+ FVLS + AD L V + D SVR G+ R+Y A+ +NG +N N
Sbjct: 33 WTFVLSCNRSADGRLRVYNYEIEVVDVSVRRGQLRIYSAINPWCYNGSTSAMNGQSN 89
>01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890
Length = 595
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 342 NFVLSFDMWA-DAGLHVILSDAADKSVRDGESRV 244
N LSFD W D LH+++ D R+ SRV
Sbjct: 12 NRALSFDDWVPDEALHLVMGHVEDPRDREAASRV 45
>12_02_1279 + 27510605-27513301
Length = 898
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 209 SRSPLWTRTAGYTLLSPSRTDLSA 280
SR+P+WT TAG T+L L+A
Sbjct: 91 SRTPVWTATAGTTILQSIVLSLTA 114
>07_03_1506 - 27161056-27161454
Length = 132
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 270 SVRDGESRVYPAVRVHNGERDFINDAVNRVTDVLSRRDEKRERD 139
+VRD E P V NG D +++ + +V RR+E R D
Sbjct: 49 AVRDDEDDGAPTVGGRNGGADEVDEDAAKPMEVTPRREEVRGDD 92
>03_05_0865 - 28365430-28367640
Length = 736
Score = 27.5 bits (58), Expect = 3.4
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -1
Query: 285 DAADKSVRDGESRVYPAVRVHNGERDFINDAVNRVTDVLSRRDEKRERDQD 133
D++ RD R R + +RD D R D SRRD R+RD+D
Sbjct: 62 DSSSSHHRDSSDRDRDRDRDRDRDRDRDRDRERRRDDD-SRRDRDRDRDRD 111
>03_02_0557 +
9450212-9450346,9450553-9450633,9450768-9451114,
9451345-9451945,9452206-9452239,9452514-9452577,
9452909-9453325,9453439-9453523,9453773-9453831,
9453931-9454043,9456407-9456509,9456597-9456654,
9456781-9456834,9456922-9457131,9457254-9457312,
9457436-9457495,9457709-9457802,9458366-9458506,
9458562-9458741
Length = 964
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 188 LTASLMKSRSPLWTRTAGYTLLSPSRTDLS 277
LTA + +P+W+ GYT+LS + L+
Sbjct: 880 LTAPVDPEMAPIWSEKLGYTILSDEQLVLA 909
>01_03_0107 -
12613491-12613538,12613906-12614139,12614682-12614713,
12616021-12616176,12617972-12618159,12618242-12618324,
12618821-12618976,12620320-12621162,12621197-12621550,
12621962-12623125
Length = 1085
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 32 PCLTFSAP*RGFSSSTLCASTTMCSAYITKP 124
PCL FS+ R S +TL + TT Y+T P
Sbjct: 460 PCLVFSSSDRDPSITTLHSLTTGKDHYVTMP 490
>01_03_0104 - 12598165-12598257,12598568-12598627,12598958-12600124
Length = 439
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 32 PCLTFSAP*RGFSSSTLCASTTMCSAYITKP 124
PCL FS+ R S +TL + TT Y+T P
Sbjct: 76 PCLVFSSSDRDPSVATLHSLTTGKDYYVTMP 106
>05_06_0083 +
25429958-25429967,25431035-25431144,25431286-25431342,
25431828-25431936,25432329-25432513,25432595-25432683,
25432877-25433132,25433623-25433865,25433955-25434266
Length = 456
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 249 RVYPAVRVHNGERDFINDAVNRVTDVLSRRDEKRERDQDN 130
+V+PA GER N AV L D + ER+ DN
Sbjct: 282 KVFPAKPYRRGERSVSNVAVMSDYASLGASDPEEEREIDN 321
>03_03_0039 -
13986844-13986907,13987219-13987273,13987492-13987606,
13987652-13987774,13987962-13988015,13988352-13988411,
13988522-13988584,13988790-13988863,13989177-13989261,
13989376-13989456,13989764-13989856,13990275-13990339,
13990407-13990482,13990570-13990635,13991094-13991153,
13991233-13991322,13991755-13991817,13992502-13992625,
13993031-13993271,13993355-13993624,13993715-13994089,
13994178-13994381,13994455-13995136,13995231-13995279,
13995362-13995488,13995564-13996258,13996718-13996965
Length = 1433
Score = 26.2 bits (55), Expect = 7.9
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -1
Query: 291 LSDAADKSVRDGESRVYPA-VRVHNGERDFINDAVNRVTDVLSRRDEKRERDQDNHGG 121
+ DA D+ D RV A V ++ D + V SR+DE RD + GG
Sbjct: 153 IKDAGDQRKSDSGRRVEAARVNYYDLTGDADEEEQMEAAIVASRQDENFRRDVEERGG 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,642,816
Number of Sequences: 37544
Number of extensions: 184145
Number of successful extensions: 608
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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