Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332A07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    50   2e-07
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    27   1.7  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    26   3.9  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   5.2  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    25   9.0  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   9.0  

>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 29/121 (23%), Positives = 54/121 (44%)
 Frame = +2

Query: 158 GGQVLRNSISLSAILGIPVRILNIRANRSKPGLAPQHLKGVELVAEMCQAKLNGAHIRST 337
           G + L + + L+ + G P+R+  I  + + PG+    +  + L+ ++    +       T
Sbjct: 11  GCEYLTHRLVLATLSGTPIRVEGIYPDEADPGVKDYQVSFLRLLEKLTNGSVIEISYTGT 70

Query: 338 QLEFKPGKIRGGHYVADTRTAGSISLLLQVALPCAVMADGPVTLELKGGTNAEMAPQIDY 517
              ++PG I GG  V D  T   I   L+  L   + A  P +L L G T++     +D 
Sbjct: 71  SFIYRPGNIIGGRVVHDCPTTKGIGYFLEPILILCLFAKTPTSLTLTGVTSSNEDIGVDV 130

Query: 518 M 520
           +
Sbjct: 131 L 131


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 238 QEQARIGTPTFKRCRASSRNVSSQTQWCSYSVNTIGVQTW 357
           +   R+  PT KR  + S  VS   +  + + NT+G +TW
Sbjct: 78  ERSGRLAAPTRKREFSLSNGVSVVLREPTMTYNTLGFKTW 117


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 418 TPSGATLCSNGGRPR 462
           TP GAT C+ GG PR
Sbjct: 240 TPRGATNCNEGGCPR 254


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +1

Query: 7   LFISILFM*PNSEDIKLISYLYLFNKYLRLYRELR 111
           L++++ F+ P+S+ ++  +YL+LF      +RE R
Sbjct: 423 LYMNLAFVEPSSKLLEDQTYLHLFGSIYNSFREER 457


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 318 VLIFGQHNWSSNLERFVE 371
           +L  GQ+ WS+N+ER ++
Sbjct: 573 LLTTGQYGWSANMERIMK 590


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 420 SKRLIEPAVRVSAT*CPPRIFPGLNSNCVDRI*APL 313
           +++  EP++R+    C   IFP  N N  + +  P+
Sbjct: 766 TRKATEPSIRIICNFCRKPIFPFSNRNECNNLPTPI 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,307
Number of Sequences: 5004
Number of extensions: 45250
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)