Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332A07f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0573 - 34815576-34815785,34816117-34816327,34816448-348166... 41 5e-04
12_02_0210 - 15617770-15618453 29 2.3
04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203 29 2.3
02_02_0556 - 11444512-11445577,11445730-11446007 29 3.0
10_08_0459 + 18092656-18092724,18092827-18092886,18092970-180930... 28 5.2
10_06_0115 - 10930295-10930777 28 5.2
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78... 28 5.2
12_02_0840 + 23572838-23573239 27 6.9
09_06_0247 + 21844311-21845646,21845991-21846118 27 6.9
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 27 9.1
>03_06_0573 -
34815576-34815785,34816117-34816327,34816448-34816623,
34816701-34816882,34817431-34817580,34817654-34817894
Length = 389
Score = 41.1 bits (92), Expect = 5e-04
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Frame = +2
Query: 158 GGQVLRNSISLSAILGIPVRILNIRANRSKPGLAPQHLKGVEL---VAEMCQAKLN--GA 322
G + R + L+ + + I +IR+ + PGL P + + L +++ LN G
Sbjct: 11 GSRHFRQRVVLATLTSTAITIDDIRSGGAAPGLRPHEVSLLHLLHKISDHHSLDLNETGK 70
Query: 323 HIRS-------TQLEFKPGKIRGGHYVA-DTRTAGSISLLLQVALPCAVMADGPVTLELK 478
R T+L +KPG I GG + D I L+ + + A P+++ LK
Sbjct: 71 DARFLPRAYLWTKLRYKPGVIVGGRDLEHDCGVHRGIGYFLEPLILLGLFARAPISIRLK 130
Query: 479 GGTNAEMAPQID 514
G TN P +D
Sbjct: 131 GITNDTKDPSVD 142
>12_02_0210 - 15617770-15618453
Length = 227
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 289 SRNVSSQTQWC-SYSVNTIGVQTWKDSWRTLC 381
SRNVSS+ SY+V T+ + TW +W +C
Sbjct: 172 SRNVSSKLGTTQSYTVTTV-IATWSSAWAIVC 202
>04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203
Length = 357
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 392 RTAGSISLLLQVALPCAVMADGPVTLELKGGTNAEMAPQID 514
R A ++ L + VALP AV+ GPV+ L + P +D
Sbjct: 20 RAAAALFLAIFVALPFAVLYRGPVSRSLHDSWEWDPLPSLD 60
>02_02_0556 - 11444512-11445577,11445730-11446007
Length = 447
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 369 EDIMLLIHAQQVQSVFYSKWRYPVQ 443
++++ L+HA+ + S+ YS+W PVQ
Sbjct: 350 KEVLKLLHARIIYSIPYSEWVSPVQ 374
>10_08_0459 +
18092656-18092724,18092827-18092886,18092970-18093038,
18093134-18093178,18093706-18094332,18094424-18094597,
18094688-18094991,18095070-18095161,18095253-18095319,
18095407-18095478,18095613-18095830,18095979-18096113,
18096225-18096520,18096603-18096774,18096860-18096958,
18097048-18097179,18097273-18097373,18097460-18097649,
18097713-18097751
Length = 986
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/73 (28%), Positives = 27/73 (36%)
Frame = +1
Query: 1 FLLFISILFM*PNSEDIKLISYLYLFNKYLRLYRELRNNE*ILGNRWEHFGRGWSSTQEF 180
FL+ F+ PNS + YL +F LRN + W F WS
Sbjct: 225 FLIVALACFLCPNSSILPSTKYLTIFQDV----NNLRNYD------WSKFIYDWSMNYMK 274
Query: 181 NIIKCNSRNTCAY 219
+K NS C Y
Sbjct: 275 KFVKTNSLGGCLY 287
>10_06_0115 - 10930295-10930777
Length = 160
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 369 EDIMLLIHAQQVQSVFYSKWRYPVQ 443
+D++ L+HA+ + V YS W PVQ
Sbjct: 101 KDVLKLLHAEIIYPVPYSVWVSPVQ 125
>06_01_0094 +
779097-779155,779882-781019,781732-782115,782842-783060
Length = 599
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 417 KRLIEPAVRVSAT*CPPRIFPGLNSNCVDRI*APLSLA*HISATSST 277
K+ +V S+T C P ++PGL + + +I A LS + A S+T
Sbjct: 30 KKTCHSSVPTSSTLCEPHVWPGLLESLLHQIIALLSSFQDLLAFSAT 76
>12_02_0840 + 23572838-23573239
Length = 133
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 406 NQSFTPSGATLCSNGGRPRHSGTEGWHQCRDG 501
+Q F P T +NGG P G +QC +G
Sbjct: 100 DQPFCPPDKTCAANGGTPYTPGCLTIYQCNNG 131
>09_06_0247 + 21844311-21845646,21845991-21846118
Length = 487
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 388 YTHSRFNQSFTPSGATLCSNGGRPRHSGTEGWHQCRDGP 504
YTHS +Q FT + A L N RP + H+ + GP
Sbjct: 431 YTHSTISQYFTTAAAGLKRNLKRPLKFHIQYPHKRQGGP 469
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 342 WSSNLERFV--EDIMLLIHAQQVQSVFYSKWR 431
W +N R V +D++ L+H + + V YS+WR
Sbjct: 385 WLNNAMREVVKKDVLKLLHTRIIYPVPYSEWR 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,407,587
Number of Sequences: 37544
Number of extensions: 300710
Number of successful extensions: 830
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -