Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332A07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58758-8|AAB93426.2|  379|Caenorhabditis elegans Hypothetical pr...    60   1e-09
AL021497-10|CAD56614.1|  490|Caenorhabditis elegans Hypothetical...    28   4.7  
AL021497-9|CAA16397.1|  487|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF125463-4|AAD12862.1|  243|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF016421-8|AAO12431.1|  230|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF016421-7|AAO12430.1|  413|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U58758-8|AAB93426.2|  379|Caenorhabditis elegans Hypothetical
           protein ZK1127.5 protein.
          Length = 379

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 38/121 (31%), Positives = 57/121 (47%)
 Frame = +2

Query: 158 GGQVLRNSISLSAILGIPVRILNIRANRSKPGLAPQHLKGVELVAEMCQAKLNGAHIRST 337
           G    R  ++ S + G P+RI+NIR N  +PG+     K + L+ ++            T
Sbjct: 10  GCNFFRIRLAYSILSGRPIRIINIRKNDDRPGIRDFESKLIGLLEKVTNGTKVEISRTGT 69

Query: 338 QLEFKPGKIRGGHYVADTRTAGSISLLLQVALPCAVMADGPVTLELKGGTNAEMAPQIDY 517
           Q+ F+PG I GG    D  T   IS  L+  L  +     P+ ++LKG TNA     +D 
Sbjct: 70  QVIFRPGMITGGVVNLDCGTERCISYFLEPLLLLSPFCKVPMVIKLKGVTNAPGEISVDG 129

Query: 518 M 520
           M
Sbjct: 130 M 130


>AL021497-10|CAD56614.1|  490|Caenorhabditis elegans Hypothetical
           protein Y51A2D.13b protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 98  IENFEIMNEFLEIDGSILEGGGQVLRNSISLSAILG 205
           +EN+   ++    DG ILE  G V R SI +S  +G
Sbjct: 142 VENYPPKDKGDNADGVILENFGAVTRKSIDISEYMG 177


>AL021497-9|CAA16397.1|  487|Caenorhabditis elegans Hypothetical
           protein Y51A2D.13a protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 98  IENFEIMNEFLEIDGSILEGGGQVLRNSISLSAILG 205
           +EN+   ++    DG ILE  G V R SI +S  +G
Sbjct: 139 VENYPPKDKGDNADGVILENFGAVTRKSIDISEYMG 174


>AF125463-4|AAD12862.1|  243|Caenorhabditis elegans Hypothetical
           protein Y49F6C.5 protein.
          Length = 243

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 286 SSRNVSSQTQWCSYSVNTIGVQTWKDSWRTL 378
           S + V+  T  C  S N I    WK SW T+
Sbjct: 48  SGKRVTFNTSHCFESTNEINGYGWKMSWETM 78


>AF016421-8|AAO12431.1|  230|Caenorhabditis elegans Hypothetical
           protein F44E7.5b protein.
          Length = 230

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 403 FNQSFTPSGATLCSNGGRPRHSG-TEGWHQCRD 498
           FN+   P    +C NG  P H+G ++ +H C +
Sbjct: 130 FNKHSLPKCEDICFNGSLPVHNGVSDMFHSCHN 162


>AF016421-7|AAO12430.1|  413|Caenorhabditis elegans Hypothetical
           protein F44E7.5a protein.
          Length = 413

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 403 FNQSFTPSGATLCSNGGRPRHSG-TEGWHQCRD 498
           FN+   P    +C NG  P H+G ++ +H C +
Sbjct: 130 FNKHSLPKCEDICFNGSLPVHNGVSDMFHSCHN 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,235,498
Number of Sequences: 27780
Number of extensions: 264050
Number of successful extensions: 545
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)