Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332A06f
         (382 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   2.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   2.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   2.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   3.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   4.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   8.5  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    20   8.5  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 82  ERTIGGGTCSGNRNQLSILPSHQQRISCIRC 174
           +R++  G  S  RN  +++ SH +    I C
Sbjct: 37  QRSVSSGFRSSLRNYKTLISSHDELPGHINC 67


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 10  RGNDENYLSHLCAGRHRR 63
           +GN EN +SH+C   +++
Sbjct: 224 QGNYENAVSHICNATNKQ 241


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 10  RGNDENYLSHLCAGRHRR 63
           +GN EN +SH+C   +++
Sbjct: 224 QGNYENAVSHICNATNKQ 241


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +1

Query: 163 CIRCCPCRLCRTGGRFSCLCRSICLS 240
           CI      LC  G  F  LC  + LS
Sbjct: 185 CIYVQSINLCMAGRLFGYLCPGMALS 210


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -3

Query: 260 DRGPKLPERQME 225
           ++GPK+PE++ E
Sbjct: 205 EKGPKVPEKKKE 216


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 256 GGRSYQRGRWSDIGS*SDRRCDISGRGSN 170
           GGRSY +GR   I + ++    +  + SN
Sbjct: 23  GGRSYGKGRGFIIQNNNNDDWSVGKKNSN 51


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 115 NRNQLSILPSHQQRISCIRCCPCRLCRT 198
           N  +  +L SH  R+  +  CP  L  T
Sbjct: 250 NEIEKRLLFSHNDRLGFLTFCPTNLGTT 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,091
Number of Sequences: 438
Number of extensions: 1831
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)