Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332A03f
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1326 - 36318942-36319037,36319126-36319135,36319298-363193...    28   2.4  
03_05_0253 + 22416981-22416993,22417458-22417639,22417965-224181...    26   9.5  

>01_06_1326 -
           36318942-36319037,36319126-36319135,36319298-36319368,
           36319594-36319679,36320217-36320295,36320401-36320493,
           36320656-36320678,36320829-36320956,36321182-36321278,
           36321394-36321646,36321744-36321887,36335560-36335811
          Length = 443

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -3

Query: 220 QNLXREINNNPKIVLIQFIGKFIKFVDGSKIENKFVI 110
           +NL ++ ++ P ++L  F+G  +KF DG+   +K V+
Sbjct: 267 ENLQQQPDHGPVVIL--FVGLTVKFRDGNNFSHKQVV 301


>03_05_0253 +
           22416981-22416993,22417458-22417639,22417965-22418148,
           22418241-22418315,22418481-22418590,22419411-22419629,
           22419713-22419868,22419996-22420232
          Length = 391

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 169 FIGKFIKFVDGSKIENKFV 113
           FI + +K+ DG K E+KFV
Sbjct: 184 FINEHVKWSDGKKFEDKFV 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,207,207
Number of Sequences: 37544
Number of extensions: 50527
Number of successful extensions: 76
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)