Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331H08f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal pro... 218 2e-57
U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical pr... 31 0.50
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical... 31 0.50
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ... 28 4.7
Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr... 27 6.2
U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related (... 27 8.1
AF022970-7|AAB69900.2| 322|Caenorhabditis elegans Hypothetical ... 27 8.1
>AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 9 protein.
Length = 189
Score = 218 bits (532), Expect = 2e-57
Identities = 99/173 (57%), Positives = 130/173 (75%)
Frame = +2
Query: 2 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 181
MK I +N V P+G+T VK+R+V V GPRG ++++F+HL +++ + L+V KWFG
Sbjct: 1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60
Query: 182 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 361
+KELAA+RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN +GN +EIRNFLGEK
Sbjct: 61 VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKI 120
Query: 362 IRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKF 520
+RRV + GV S QKDE+++EGN ++ VS +AA IQQST VK KDIRKF
Sbjct: 121 VRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKF 173
>U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical
protein T20B12.3 protein.
Length = 504
Score = 31.1 bits (67), Expect = 0.50
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 252 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 115
L P +++ + ++++LT SFL H T+ F R+S +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318
>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
protein Y47G6A.29 protein.
Length = 2460
Score = 31.1 bits (67), Expect = 0.50
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Frame = +2
Query: 119 HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 283
H+ D++++ + ++ WF ++L ++RT C S ++ I +T KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420
Query: 284 AHF 292
+F
Sbjct: 421 LNF 423
>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
protein D1007.15 protein.
Length = 1184
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +2
Query: 245 VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 382
++ F Y + +++ FPI C+ + I+ + +G Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130
>Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical
protein T01H3.2 protein.
Length = 980
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 385 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 251
RC L ++F + +T LNN + + GD +++ + S VL F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522
>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
protein M110.4b protein.
Length = 1155
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 130 NSQVFEVPFENSAGPFNCHQTRFHMDR 50
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
protein M110.4a protein.
Length = 1156
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 130 NSQVFEVPFENSAGPFNCHQTRFHMDR 50
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related
(ectopic expressionof hox genes) protein 3 protein.
Length = 531
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -3
Query: 177 NHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVTRRDFT 58
NH ++R+ M T K + TP G L +T + T
Sbjct: 427 NHIPDYKRKDLLKSMDTLKFCEIFRPTPTGALQLTAAEVT 466
>AF022970-7|AAB69900.2| 322|Caenorhabditis elegans Hypothetical
protein F13A2.6 protein.
Length = 322
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 409 WRVNDSHTRCHLYPSD 362
W V+D T C+L+PSD
Sbjct: 71 WMVSDYDTSCYLFPSD 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,079,000
Number of Sequences: 27780
Number of extensions: 254963
Number of successful extensions: 632
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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