Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331H07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-3|AAK39266.1|  747|Caenorhabditis elegans Hypothetical ...    28   3.5  
U80455-5|AAB37883.1|  216|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF025463-3|AAB71009.2|  403|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AF100669-3|AAK39266.1|  747|Caenorhabditis elegans Hypothetical
           protein R11E3.4 protein.
          Length = 747

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 350 E*YRKNRLFGLAFRGSNSIPDQSISLLIYVFRIRELDVL 234
           E YRKN + G A R  NSIP     ++ +   + + D+L
Sbjct: 408 EIYRKNEIMGFAIRTLNSIP-AGTPVMEFTGELMDFDIL 445


>U80455-5|AAB37883.1|  216|Caenorhabditis elegans Hypothetical
           protein T01D1.3 protein.
          Length = 216

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 363 KKTNVMTEFCKHFKDACVYMC 425
           KKTN    FCK FK+  +Y+C
Sbjct: 107 KKTN-FARFCKEFKNQYLYVC 126


>AF025463-3|AAB71009.2|  403|Caenorhabditis elegans Hypothetical
           protein K10B4.4 protein.
          Length = 403

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 388 FVSTLKTLVFICVFFVHELTVAHPLL*S*CLTYWWXNVQVII 513
           F S    ++  C  F   L + HPL      T W  NV +I+
Sbjct: 115 FTSYASIMIICCFSFERWLAICHPLRSKIFSTLWRANVLIIL 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,887,847
Number of Sequences: 27780
Number of extensions: 243838
Number of successful extensions: 402
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)