BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331H05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0556 - 23848751-23849158,23850615-23850797,23853644-238539... 51 6e-07
12_02_1230 - 27204881-27205765 47 1e-05
04_04_0373 - 24785799-24786200,24787979-24788161,24790909-247911... 44 6e-05
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 44 1e-04
02_04_0234 + 21141704-21141940,21142408-21142477,21142646-211428... 44 1e-04
01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309 44 1e-04
06_03_0618 + 22798419-22798588,22798672-22798771,22798891-227989... 40 0.001
10_08_0505 + 18384392-18384454,18384593-18384679,18385878-183864... 39 0.002
02_05_0431 + 28933418-28933951,28934066-28934213,28934729-28935030 38 0.005
03_01_0109 - 863381-863575,863749-863795,863893-863980,864078-86... 37 0.011
04_04_1598 + 34698260-34698316,34698438-34699544 36 0.015
04_03_0745 + 19244089-19244521,19244638-19244723,19245090-192452... 36 0.015
06_02_0059 - 11022306-11022578,11022812-11022881,11022966-110232... 36 0.026
11_04_0088 + 13377605-13378237 35 0.034
12_01_0844 + 7915121-7915225,7915724-7915777,7915888-7915968,791... 35 0.046
04_03_0746 + 19247529-19247723,19247808-19248000,19248145-192482... 35 0.046
04_04_1139 + 31173271-31173462,31173928-31174087,31174318-311744... 34 0.060
04_04_0605 + 26549904-26551939,26553931-26554180,26554764-265548... 34 0.060
02_05_0091 + 25745971-25746050,25746196-25746439,25746542-257466... 34 0.080
02_01_0118 + 870911-871203,872559-872679,872975-873092,873218-87... 33 0.11
06_02_0053 - 10974209-10974229,10974562-10974621,10974708-109747... 33 0.14
04_03_0648 - 18393142-18393174,18393259-18393341,18393569-183936... 33 0.18
04_04_0105 - 22812730-22813066,22813406-22813565,22814613-22814820 32 0.32
02_03_0341 - 17948124-17948183,17948417-17948499,17948668-179487... 31 0.42
04_04_0607 - 26564345-26564728,26565187-26565249,26565421-265655... 31 0.56
02_01_0606 + 4543031-4543177,4543287-4543709,4543836-4543952,454... 31 0.56
07_03_1587 + 27937243-27937251,27937813-27937872,27938007-279380... 30 1.3
06_01_0199 + 1538124-1538485,1538997-1539076,1539198-1539357,153... 30 1.3
03_02_0499 - 8908323-8908423,8908822-8908972,8909761-8909867,890... 30 1.3
01_05_0285 - 20382305-20382563,20383315-20384504 30 1.3
01_01_0012 + 71903-72935,73468-73981,74619-76008 30 1.3
07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698... 29 1.7
11_04_0393 + 17185845-17186042,17189342-17189534,17190513-171905... 29 2.3
08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426 29 2.3
08_01_0966 + 9751198-9751530,9752182-9752337,9753145-9753240,975... 29 3.0
05_01_0292 - 2285238-2286023,2286094-2286210 29 3.0
10_08_0571 - 18855317-18855541,18855667-18855747,18855849-188559... 28 4.0
07_01_0500 + 3744062-3744847 27 6.9
03_01_0641 - 4697273-4697672,4697921-4698102,4698218-4698403,469... 27 6.9
02_05_0093 + 25753021-25753061,25753159-25753402,25753843-257539... 27 6.9
09_04_0404 + 17322664-17322718,17323676-17323849,17324695-173248... 27 9.1
07_03_0894 + 22362717-22363514 27 9.1
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 27 9.1
03_01_0585 - 4331111-4331850,4331960-4332224 27 9.1
>02_04_0556 -
23848751-23849158,23850615-23850797,23853644-23853908,
23854019-23854059
Length = 298
Score = 50.8 bits (116), Expect = 6e-07
Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
Frame = +3
Query: 81 LVAVTGCDSGLGWAVAARLAREGFITIAGMHKGIETEAAKALEK---LCAHTF-PLDVTR 248
+ VTG + G+G A+AARLA +G + G EAA A + L + F LDV+
Sbjct: 22 VAVVTGANRGIGHALAARLAEQGLAVVLTARDGARGEAAAAALRARGLRSVRFRRLDVSD 81
Query: 249 VESVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRV 428
SV F ++ L +VNNA V + + + + E+ + N GA +
Sbjct: 82 PASVAAFASWLRDELGG-----LDILVNNAAV-SFNEIDTNSVEHAETVLRTNFYGAKML 135
Query: 429 ISAFLPEIRKTAIETTSKPKPRIINVGSHCG 521
I A LP R++A + RI+N+ S G
Sbjct: 136 IEALLPLFRRSAANS------RILNISSQLG 160
>12_02_1230 - 27204881-27205765
Length = 294
Score = 46.8 bits (106), Expect = 1e-05
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Frame = +3
Query: 81 LVAVTGC-DSGLGWAVAARLAREGFITIAGMHKGIETEAAKALEKLCAHTFPLDVTRVES 257
+V +TGC + G+G+ A G +A + L L A PLDVT ES
Sbjct: 19 VVLITGCANGGIGYEYCKAFASLGCRVVATD----VPDRVPDLAGLDADHLPLDVTSDES 74
Query: 258 VQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISA 437
V+ V VL ++ + +VNNAG+ G + + + VN LG +R++ A
Sbjct: 75 VEGA---VARVLAEHGRVD--VLVNNAGIGCTGPLAELRGEAVRRAMDVNFLGQLRMVRA 129
Query: 438 FLPEIRKTAIETTSKPKPRIINVGSHCG 521
P + S+ R++NVGS G
Sbjct: 130 VAPHM-------ASRRSGRVVNVGSVVG 150
>04_04_0373 -
24785799-24786200,24787979-24788161,24790909-24791170,
24791565-24791656
Length = 312
Score = 44.4 bits (100), Expect = 6e-05
Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 3/150 (2%)
Frame = +3
Query: 81 LVAVTGCDSGLGWAVAARLAREGF---ITIAGMHKGIETEAAKALEKLCAHTFPLDVTRV 251
+ VTG + G+G A+AARL G +T +G AA L LDV
Sbjct: 39 VAVVTGANRGIGLALAARLGEHGITVVLTARDAERGEAAAAALRARGLHVVFHRLDVADP 98
Query: 252 ESVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVI 431
SVQ F ++ + +VNNA V + + + + E+ + N GA +
Sbjct: 99 ASVQAFAAWLRDAIGG-----LDILVNNAAV-SFNEIDTNSVEHAETVLRTNFYGAKMLT 152
Query: 432 SAFLPEIRKTAIETTSKPKPRIINVGSHCG 521
A LP R+ S RI+N+ S G
Sbjct: 153 EALLPLFRR------SPATSRILNISSQLG 176
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 43.6 bits (98), Expect = 1e-04
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
Frame = +3
Query: 54 IVSAMSVSRL-VAVTGCDSGLGWAVAARLAREG---FITIAGMHKG--IETEAAKALEKL 215
+ + + SRL V VTG +G+G A LA G + + G ++ A+ +
Sbjct: 27 VTAGVDASRLTVVVTGATNGIGKETARVLALRGAEVILPARTLESGMKVKQSLAEEIPSS 86
Query: 216 CAHTFPLDVTRVESVQEFRKYVLTVLKDNPKYK-FHAVVNNAGVMTVGKYEWMTASMIES 392
H +D++ ++SV+ F K N Y+ + ++NNAGVM+ ++ IE
Sbjct: 87 KLHVMEMDLSSLDSVRSFAK------SFNSSYRHLNVLINNAGVMSCP--FGLSKDGIEL 138
Query: 393 PVHVNLLGAMRVISAFLPEIRKTAIETTSKPKPRIINVGS 512
N +G + + L +++ TA ET + RIINV S
Sbjct: 139 QFATNHVGHFLLTNLLLDKMKATAKETGL--QGRIINVSS 176
>02_04_0234 +
21141704-21141940,21142408-21142477,21142646-21142839,
21142928-21143100,21144233-21144302
Length = 247
Score = 43.6 bits (98), Expect = 1e-04
Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 1/130 (0%)
Frame = +3
Query: 60 SAMSVSRLVAVTGCDSGLGWAVAARLAREGFITIAGMHKGIETEAAKALEKLCAHTFPLD 239
+A + R V +TG GLG A+A LAR G + + +A A F L
Sbjct: 17 AAAAGPRTVLITGVSRGLGRALALELARRGHAVVGCGRSADHVRSLEAEIATPARHF-LT 75
Query: 240 VTRVESVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEW-MTASMIESPVHVNLLG 416
V V S + V++ K +VNNAG + W + A ++ V N+ G
Sbjct: 76 VADVRSDSNMAELAKAVVE--KKQVPDIIVNNAGTINKNNKTWSVPAEEFDTVVDTNIKG 133
Query: 417 AMRVISAFLP 446
V+ F+P
Sbjct: 134 TANVLRHFIP 143
>01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309
Length = 330
Score = 43.6 bits (98), Expect = 1e-04
Identities = 45/154 (29%), Positives = 65/154 (42%), Gaps = 7/154 (4%)
Frame = +3
Query: 81 LVAVTGCDSGLGWAVAARLAREGF---ITIAGMHKGIE-TE---AAKALEKLCAHTFPLD 239
+ VTG + G+G+ A +LA G +T +G + TE AA + LD
Sbjct: 49 VAVVTGANRGIGYEAARQLATHGLHVVLTSRDAARGRDATEQIRAAAGKPGVSVEWRQLD 108
Query: 240 VTRVESVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGA 419
VT SV+ F +V + H +VNNAGV + + E + N G
Sbjct: 109 VTDAASVEGFATWV-----ERTHGGVHVLVNNAGV-NFNRGADNSVEFAEQVIETNYFGT 162
Query: 420 MRVISAFLPEIRKTAIETTSKPKPRIINVGSHCG 521
R+I A +P + TS RI+NV S G
Sbjct: 163 KRMIEAMMP------LMITSPHGGRIVNVSSRLG 190
>06_03_0618 +
22798419-22798588,22798672-22798771,22798891-22798971,
22799131-22799180,22799302-22799452,22800027-22800083,
22800171-22800292,22800397-22800601
Length = 311
Score = 40.3 bits (90), Expect = 0.001
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 3/144 (2%)
Frame = +3
Query: 90 VTGCDSGLGWAVAARLAREG---FITIAGMHKGIETEAAKALEKLCAHTFPLDVTRVESV 260
VTG +SG+G+A A LA G ++ +G ET ++ K L++ + S+
Sbjct: 39 VTGANSGIGFATAEGLASRGATVYMLCRNKERG-ETALSQIRSKTGNMNVHLEICDLSSI 97
Query: 261 QEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISAF 440
E + + T K H +VNNAG++ + T +E VN+ +
Sbjct: 98 SEVKSFA-TKFSSTDK-PLHVLVNNAGLLEHKRV--TTPEGLELNFAVNVAATYTLTELV 153
Query: 441 LPEIRKTAIETTSKPKPRIINVGS 512
+P + K A P R+I V S
Sbjct: 154 MPLLEKAA------PDARVITVSS 171
>10_08_0505 +
18384392-18384454,18384593-18384679,18385878-18386409,
18387042-18387564,18387734-18387791
Length = 420
Score = 39.1 bits (87), Expect = 0.002
Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
Frame = +3
Query: 90 VTGCDSGLGWAVAARLAREG-FITIAGMHKGIE-TEAAKA--LEKLCAHTFPLDVTRVES 257
+TG SGLG A A LA G + + G ++ + AAKA +EK LD+ ++S
Sbjct: 90 ITGASSGLGLATAKALAETGRWHVVMGCRDFLKASRAAKAAGMEKGSYTIVHLDLASLDS 149
Query: 258 VQEFRKYVLTVLKDNPKYKFHAVVNNAGV-MTVGKYEWMTASMIESPVHVNLLGAMRVIS 434
V++F V + + VV NA V K TA E V VN LG +
Sbjct: 150 VRQFVANVRRL-----EMPVDVVVCNAAVYQPTAKQPSFTADGFEMSVGVNHLGHFLLAR 204
Query: 435 AFLPEIRKTAIETTSKPKPRIINVGSHCG 521
L + + ++ P R+I VGS G
Sbjct: 205 ELLAD-----LTSSDYPSKRLIIVGSITG 228
>02_05_0431 + 28933418-28933951,28934066-28934213,28934729-28935030
Length = 327
Score = 37.9 bits (84), Expect = 0.005
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Frame = +3
Query: 78 RLVAVTGCDSGLGWAVAARLAREGF-ITIAGMHKGIETEAAKALEKLCAHTFPLDVTRVE 254
R V +TG SG+G A+A AREG ++I + EA A+ + V
Sbjct: 37 RHVLITGGSSGIGLAMATAAAREGARVSILARNAARLEEARGAIRAATGRDVGVHAADVR 96
Query: 255 SVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVIS 434
+ + + P +V N GV + E ++ V +NL+G ++
Sbjct: 97 DADAVAR---ALAEAGP---VDVLVCNHGVFVPQELEKQEMEEVKWMVDINLMGTFHLVK 150
Query: 435 AFLPEIRKTAIET 473
A LP +++ ET
Sbjct: 151 AALPAMKERTKET 163
>03_01_0109 -
863381-863575,863749-863795,863893-863980,864078-864159,
864264-864420,864501-864583,864724-864955,865032-865146
Length = 332
Score = 36.7 bits (81), Expect = 0.011
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 5/146 (3%)
Frame = +3
Query: 90 VTGCDSGLGWAVAARLAREGF-ITIAGMHKGIETEAAKALEKLC----AHTFPLDVTRVE 254
+TG SG+G A LA+ G + I + + + C PLD++ +
Sbjct: 37 ITGATSGIGAETARVLAKRGARVVIPARNVKAAEDMRARIRGECPGADVLVLPLDLSSLA 96
Query: 255 SVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVIS 434
SV+ F L++ H ++NNAG + G+ ++ +E N LG +
Sbjct: 97 SVRAFADRFLSL-----GLPLHLLINNAGKFSHGQLA-LSEDGVEMTFATNYLGHFLLTK 150
Query: 435 AFLPEIRKTAIETTSKPKPRIINVGS 512
L + +TA T + RI+NV S
Sbjct: 151 LLLGRMAETAAAT--GVQGRIVNVSS 174
>04_04_1598 + 34698260-34698316,34698438-34699544
Length = 387
Score = 36.3 bits (80), Expect = 0.015
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 2/149 (1%)
Frame = +3
Query: 81 LVAVTGCDSGLGWAVAARLAREG-FITIAGMHKGIETEAAKALEKLCAHTFPLDVTRVES 257
+V +TG SGLG A A LA G + + ++ A + A ++ + + S
Sbjct: 75 VVVITGASSGLGLAAAKALAETGKWHVVMACRDFLKAATAAKAAGMAAGSYTVMHLDLAS 134
Query: 258 VQEFRKYVLTVLKDNPKYKFHAVVNNAGV-MTVGKYEWMTASMIESPVHVNLLGAMRVIS 434
+ R++V + A+V NA + + TA E V VN LG +
Sbjct: 135 LDSVRQFVDNFRRSG--MPLDALVCNAAIYRPTARQPTFTADGYEMSVGVNHLGHFLLAR 192
Query: 435 AFLPEIRKTAIETTSKPKPRIINVGSHCG 521
L +++K + P R+I +GS G
Sbjct: 193 LMLDDLKK-----SDYPSRRLIILGSITG 216
>04_03_0745 +
19244089-19244521,19244638-19244723,19245090-19245221,
19245335-19245499,19245602-19245892
Length = 368
Score = 36.3 bits (80), Expect = 0.015
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 5/131 (3%)
Frame = +3
Query: 78 RLVAVTGCDSGLGWAVAARLAREG--FITIAGMHKGIETEA--AKALEKLCAHTFPLDVT 245
++V VTG SG+G VA R AR G +A + A A+AL P DV
Sbjct: 67 KVVLVTGASSGIGEQVAYRYARRGARLALVARREASLGEVAARARALGSPDVLAVPGDVA 126
Query: 246 RVESVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWM-TASMIESPVHVNLLGAM 422
R + + R++V ++ + +VNNAG+ V +E + + + + VN G +
Sbjct: 127 RPD---DCRRFVQATVEHFG--RLDHLVNNAGLANVCWFEEVPDVANFKQVLDVNFWGTV 181
Query: 423 RVISAFLPEIR 455
A LP ++
Sbjct: 182 HPTHAALPHLK 192
>06_02_0059 -
11022306-11022578,11022812-11022881,11022966-11023254,
11023770-11024109
Length = 323
Score = 35.5 bits (78), Expect = 0.026
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Frame = +3
Query: 90 VTGCDSGLGWAVAARLAREGF-ITIAGMHKGIETEAAKALEKLCAH------TFPLDVTR 248
VTG SG+G A+A LA G + + G + A A+ + +H T D +
Sbjct: 49 VTGPTSGIGRAMALELAGRGLNVVLVGRDPAKLRDVAGAIARSHSHHGVRTKTVVFDFSL 108
Query: 249 VESVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGK--YEWMTASMIESPVHVNLLGAM 422
V +VQ K + + + VVNNAGV G + + + VN+L
Sbjct: 109 VSTVQG-EKAMAALRETVEGLDVGVVVNNAGVAKPGAMFLHEVEVEPLMRMIRVNMLALT 167
Query: 423 RVISAFLP 446
+V +A LP
Sbjct: 168 KVTAAVLP 175
>11_04_0088 + 13377605-13378237
Length = 210
Score = 35.1 bits (77), Expect = 0.034
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 11/152 (7%)
Frame = +3
Query: 90 VTGCDSGLGWAVAARLAREGF-ITIAGMHKG------IETEAAKALEKLCAHTFPLDVTR 248
VTG G+G AVA LAR G + + G + G E AA K+ F L
Sbjct: 46 VTGATDGIGRAVALELARRGLHLVLVGRNPGKLSGVCKEVRAAAPACKVRTVVFDLAAPG 105
Query: 249 VESV--QEFRKYVLTVLKDNPKYKFHAVVNNAGVM--TVGKYEWMTASMIESPVHVNLLG 416
+ V E + V V +VNNAG + + ++ E+ + VN++
Sbjct: 106 DDDVGGGELSRGVARVAAAVEGLDVGLLVNNAGATYPCAAYFHEVPDAVWEAVLRVNVVA 165
Query: 417 AMRVISAFLPEIRKTAIETTSKPKPRIINVGS 512
A R+ A +P + +K + ++NVGS
Sbjct: 166 ATRIARALVPAM-------AAKGRGAVVNVGS 190
>12_01_0844 +
7915121-7915225,7915724-7915777,7915888-7915968,
7916164-7916209,7916311-7916405,7916581-7916613,
7916941-7917286,7917372-7917511
Length = 299
Score = 34.7 bits (76), Expect = 0.046
Identities = 42/151 (27%), Positives = 59/151 (39%), Gaps = 4/151 (2%)
Frame = +3
Query: 81 LVAVTGCDSGLGWAVAARLAREGFITIAGMHK-GIET-EAAKALEKL--CAHTFPLDVTR 248
+ VTG G+G A+A L + G I K G+E E + +E+ A TF DV+
Sbjct: 11 VAVVTGASRGIGRAIAVALGKAGCKVIVNYAKSGMEAEEVCREIEESGGTAITFSADVSI 70
Query: 249 VESVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRV 428
V+ + + +VNNAG+ M + + V VNL G
Sbjct: 71 EAEVESMMRAAIDTWG-----TLDVLVNNAGITRDALLMRMKRTQWQEVVDVNLTGVYLC 125
Query: 429 ISAFLPEIRKTAIETTSKPKPRIINVGSHCG 521
A A K K RIIN+ S G
Sbjct: 126 AQA-------AAGVMMMKKKGRIINITSVSG 149
>04_03_0746 +
19247529-19247723,19247808-19248000,19248145-19248230,
19248861-19249028,19249445-19249738
Length = 311
Score = 34.7 bits (76), Expect = 0.046
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Frame = +3
Query: 78 RLVAVTGCDSGLGWAVAARLAREG-FITIAGMHKGIETEAAKALEKLCAHTFPLDVTRVE 254
++V +TG SG+G +A AR G ++ + + E A + + V
Sbjct: 52 KVVLITGASSGIGEHLAYEYARRGAYLALVARREESLREVGDAALAAGSPGVLVVAGDVS 111
Query: 255 SVQEFRKYVLTVLKDNPKY--KFHAVVNNAGVMTVGKYEWMT 374
S + RK+V D +Y + +VNNA + VGK+E +T
Sbjct: 112 SPDDCRKFV----DDTIRYFGRLDHLVNNASIWQVGKFEELT 149
>04_04_1139 +
31173271-31173462,31173928-31174087,31174318-31174487,
31174566-31174788,31175053-31175207
Length = 299
Score = 34.3 bits (75), Expect = 0.060
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Frame = +3
Query: 90 VTGCDSGLGWAVAARLAREG-FITIAGMHKGIETEAAKALEK--LCAHTFPLDVTRVESV 260
VTG SG+G+ +AA+LAR G + I G + + +A AL L A F DV + E
Sbjct: 19 VTGGGSGIGFEIAAQLARHGAHVAIMGRRREVLDKAVAALRSHGLRAVGFEGDVRKQEDA 78
Query: 261 QEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISAF 440
R TV K +VN A + E +T + V ++ +G +
Sbjct: 79 A--RVVAATVQHFG---KLDILVNGAAGNFLASPEDLTPKGFRTVVDIDTVGTYTMCYEA 133
Query: 441 LPEIRK 458
L ++K
Sbjct: 134 LKYLKK 139
>04_04_0605 + 26549904-26551939,26553931-26554180,26554764-26554829,
26555194-26555388,26555830-26556141,26556537-26556595,
26557138-26557381,26557466-26557528,26557997-26558386
Length = 1204
Score = 34.3 bits (75), Expect = 0.060
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +3
Query: 75 SRLVAVTGCDSGLGWAVAARLAREGF---ITIAGMHKGIE-TEAAKALEKLCAHTFPLDV 242
SR+ VTG + G+G V +LA +G +T +G+E E + + C L+V
Sbjct: 972 SRVAVVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVEAAEKLRGMGLSCVIFHHLEV 1031
Query: 243 TRVESVQEFRKYVLTVLKDNPKYKFHAVVNNAGV 344
T SV ++ T K +VNNA V
Sbjct: 1032 TDSSSVSRLADFLTTRFG-----KLEILVNNAAV 1060
Score = 29.1 bits (62), Expect = 2.3
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Frame = +3
Query: 57 VSAMSVSRLVAVTGCDSGLGWAVAARLAREGF-ITIAGMHKGIETEAAKALEKLCAHT-- 227
VS +S R+ VTG + G+G +LA G + + ++ EA + + A
Sbjct: 672 VSGLSGGRIALVTGGNKGVGLETCRQLASRGLRVVLTARNEARGLEAVDGIRRSGAADSD 731
Query: 228 ---FPLDVTRVESVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGK 359
LDVT SV +V +D + ++NNAG+ V +
Sbjct: 732 VVFHQLDVTDAASVARLADFV----RDQ-FGRLDILINNAGISGVDR 773
>02_05_0091 +
25745971-25746050,25746196-25746439,25746542-25746628,
25747060-25747245,25747527-25747904
Length = 324
Score = 33.9 bits (74), Expect = 0.080
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Frame = +3
Query: 75 SRLVAVTGCDSGLGWAVAARLAREG-FITIAGMHKGIETEAAKALEK--LCAHTF-PLDV 242
+R+ VTG + G+G + +LA G + + + ++A KALE+ L F LDV
Sbjct: 26 TRVAVVTGGNRGVGLEICRQLASNGILVVLTARDEKKGSQAVKALEQSGLSGVIFHQLDV 85
Query: 243 TRVESVQEFRKYVLTVLKDNPKYKFHAVVNNAGV 344
T S+ +++ T KF+ +VNNA +
Sbjct: 86 TDRSSIMLLVEFIRTKFG-----KFNILVNNAAI 114
>02_01_0118 +
870911-871203,872559-872679,872975-873092,873218-873354,
873583-873684,873862-873954,875047-875119,875213-875478
Length = 400
Score = 33.5 bits (73), Expect = 0.11
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 9/150 (6%)
Frame = +3
Query: 90 VTGCDSGLGWAVAARLAREG-FITIAGMHKGIETEAAKALEK--------LCAHTFPLDV 242
VTG SG+G +A +LA G + +A + E + + L A LD+
Sbjct: 85 VTGATSGIGLEIARQLALAGGHVVMAVRRTKLAQELIQKWQNDNSEIGKPLNAEVMELDL 144
Query: 243 TRVESVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAM 422
++SV +F + H ++NNAG+ ++G+ + + E + VN L
Sbjct: 145 LSLDSVVKFADAWNARMAP-----LHVLINNAGIFSIGEPQRFSKDGYEEHMQVNHLAPA 199
Query: 423 RVISAFLPEIRKTAIETTSKPKPRIINVGS 512
+ LP + + P RI+NV S
Sbjct: 200 LLAVLLLPSLLR------GSPS-RIVNVNS 222
>06_02_0053 -
10974209-10974229,10974562-10974621,10974708-10974750,
10975818-10975903,10976405-10976474,10976604-10977265
Length = 313
Score = 33.1 bits (72), Expect = 0.14
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 7/148 (4%)
Frame = +3
Query: 90 VTGCDSGLGWAVAARLAREGF-ITIAGMHKGIETE---AAKALEKLCAHTFPLDVTRVES 257
VTG SG+G A+A LAR G + + G I E ++L K+ T D++ V +
Sbjct: 63 VTGPTSGIGRAMALELARHGLNLVLVGRDPAILREISGTVRSLHKVKTKTVVFDLSLVWT 122
Query: 258 VQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIES---PVHVNLLGAMRV 428
+ + + + + VVNNAGV G ++ + +E+ V VN+ V
Sbjct: 123 -PDGDEPLRRLREAVEGLDVGVVVNNAGVAKPGAV-YLHEADVEAWVRMVRVNMSAVTEV 180
Query: 429 ISAFLPEIRKTAIETTSKPKPRIINVGS 512
+ LP + S+ + I+N+GS
Sbjct: 181 TAVVLPGM-------VSRGRGAIVNIGS 201
>04_03_0648 -
18393142-18393174,18393259-18393341,18393569-18393662,
18393746-18393880,18394190-18394222,18394302-18394396,
18394494-18394539,18394639-18394719,18395464-18395517,
18395809-18395951,18397645-18397804
Length = 318
Score = 32.7 bits (71), Expect = 0.18
Identities = 45/152 (29%), Positives = 61/152 (40%), Gaps = 5/152 (3%)
Frame = +3
Query: 81 LVAVTGCDSGLGWAVAARLAREG---FITIAGMHKGIETEAAKALEKL--CAHTFPLDVT 245
+V VTG G+G A A L + G + A K E E +K +E A TF DV+
Sbjct: 77 VVIVTGASRGIGKATALALGKAGCKVLVNYARSSKEAE-EVSKEIEACGGQAITFGGDVS 135
Query: 246 RVESVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMR 425
+ V K L + +VNNAG+ M S + + +NL G
Sbjct: 136 KEADVDSMMKAAL-----DKWGTIDVLVNNAGITRDTLLMRMKKSQWQDVIDLNLTG--- 187
Query: 426 VISAFLPEIRKTAIETTSKPKPRIINVGSHCG 521
FL T I K K +IIN+ S G
Sbjct: 188 ---VFLCTQAATKI-MMKKKKGKIINIASVVG 215
>04_04_0105 - 22812730-22813066,22813406-22813565,22814613-22814820
Length = 234
Score = 31.9 bits (69), Expect = 0.32
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = +3
Query: 324 VVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVISAFLPEIRKTAIETTSKPKPRIIN 503
+VNNAGV V + + N+ GAMR+I A +P++ IE + + I+N
Sbjct: 40 LVNNAGVHLVAPLAEVPMEEFQQVFDTNVYGAMRLIHAVIPQM----IE---REQGTIVN 92
Query: 504 VGS 512
VGS
Sbjct: 93 VGS 95
>02_03_0341 -
17948124-17948183,17948417-17948499,17948668-17948761,
17948848-17948982,17949099-17949131,17949207-17949301,
17949394-17949439,17949517-17949597,17949874-17949927,
17950361-17950506,17952192-17952330
Length = 321
Score = 31.5 bits (68), Expect = 0.42
Identities = 40/158 (25%), Positives = 61/158 (38%), Gaps = 5/158 (3%)
Frame = +3
Query: 63 AMSVSRLVAVTGCDSGLGWAVAARLAREGFITIAGMHKGIETEAAKALEKL-----CAHT 227
A S + +V VTG G+G A+A + G + + T+A + +++ A T
Sbjct: 65 AQSEAPVVVVTGASRGIGKAIALAFGKAGCKVLVNYARS-STDAEEVCKEIEGFGGQAIT 123
Query: 228 FPLDVTRVESVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVN 407
F DV+ V K + +VNNAG+ M S + V +N
Sbjct: 124 FRGDVSNEADVDSMIKAAVDTWG-----TIDVLVNNAGITRDTLLLRMKKSQWQDVVDLN 178
Query: 408 LLGAMRVISAFLPEIRKTAIETTSKPKPRIINVGSHCG 521
L G A + K K K R+IN+ S G
Sbjct: 179 LTGVFLCTQAATKVMMK-------KKKGRVINIASVVG 209
>04_04_0607 -
26564345-26564728,26565187-26565249,26565421-26565592,
26565707-26565741
Length = 217
Score = 31.1 bits (67), Expect = 0.56
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +3
Query: 57 VSAMSVSRLVAVTGCDSGLGWAVAARLAREGFITIAGMHKGIETEAAKALEKL 215
++++ R+ VTG + G+G V +LA +G IT+ + ET +A EKL
Sbjct: 5 ITSLPTKRVAVVTGGNKGIGLEVCRQLAADG-ITVV-LTARDETRGVEAAEKL 55
>02_01_0606 +
4543031-4543177,4543287-4543709,4543836-4543952,
4544064-4544423
Length = 348
Score = 31.1 bits (67), Expect = 0.56
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 120 AVAARLAREGFITIAGMHKGIETEAAKALEKLCAHTFPLDVTRV-ESVQEFRKYVLTVLK 296
A AA A + T K I E + KL H P D++ V + ++RKY V K
Sbjct: 148 AAAAGYADQTECTSGEPCKRIREECKPKISKLYVHADPSDLSLVVKDGYQWRKYGQKVTK 207
Query: 297 DNP 305
DNP
Sbjct: 208 DNP 210
>07_03_1587 +
27937243-27937251,27937813-27937872,27938007-27938008,
27938208-27939012
Length = 291
Score = 29.9 bits (64), Expect = 1.3
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +3
Query: 78 RLVAVTGCDSGLGWAVAARLAREGF-ITIAGMHKGIETEAAKALEKLCAHTFPLDVTRVE 254
++ +TG SG+G A AA R G + +A + + A L A DVT +
Sbjct: 28 KVAVITGAASGIGKATAAEFVRNGAKVILADVQDDVGRAVASELGADAASYTRCDVT--D 85
Query: 255 SVQEFRKYVLTVLKDNPKYKFHAVVNNAGVM 347
Q L V + + +VNNAG++
Sbjct: 86 EAQVAAAVDLAVARHG---QLDVMVNNAGIV 113
>06_01_0199 +
1538124-1538485,1538997-1539076,1539198-1539357,
1539497-1539578,1540080-1540167,1540256-1540302,
1540623-1540865
Length = 353
Score = 29.9 bits (64), Expect = 1.3
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 7/148 (4%)
Frame = +3
Query: 90 VTGCDSGLGWAVAARLAREG--FITIAGMHKGIETEAAKALEKLCAH-----TFPLDVTR 248
+TG SG+G A LA+ G + A K A+ L + A PLD++
Sbjct: 40 ITGATSGIGAETARVLAKRGARLVLPARSLKAAAEARARLLAECPAAAGDVVVMPLDLSS 99
Query: 249 VESVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMTASMIESPVHVNLLGAMRV 428
+ SV+ F L + + ++NNAG ++ ++ +E N LG +
Sbjct: 100 LASVRRFAARFLAL-----GLPLNLLINNAGKF-ADRFA-LSDDGVEMTFATNYLGHFLL 152
Query: 429 ISAFLPEIRKTAIETTSKPKPRIINVGS 512
+ ++ +TA T + RI+NV S
Sbjct: 153 TKLLMEKMAETAAAT--GVEGRIVNVSS 178
>03_02_0499 -
8908323-8908423,8908822-8908972,8909761-8909867,
8909954-8910170,8910941-8911148,8911261-8911358
Length = 293
Score = 29.9 bits (64), Expect = 1.3
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Frame = +3
Query: 78 RLVAVTGCDSGLGWAVAARLAREGFITIAGMH--KGIETEAAKALEKLCAHTFPLDVTRV 251
++ VTG G+G AV LA G A +H E E + L++ A F + ++
Sbjct: 21 KMALVTGGTRGIGRAVVEELAALG----AAVHTCSRNEAELGERLKEWEARGFRVTISVC 76
Query: 252 E-SVQEFRKYVLTVLKDNPKYKFHAVVNNAGV--------MTVGKYEWMTASMIESPVHV 404
+ S ++ R+ ++ + D K +VNN G + +Y ++ A+ +ES H+
Sbjct: 77 DLSARDQRERLIGDVADRFGGKLDILVNNVGTNIRKPTTEYSADEYSFLMATNLESAYHL 136
Query: 405 NLLG 416
LG
Sbjct: 137 CQLG 140
>01_05_0285 - 20382305-20382563,20383315-20384504
Length = 482
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -2
Query: 211 FSRAFAASVSIPLCIPAIVMKPSRANRAATAQPS 110
F AFAA +P PA+V+ PS A+ AA A S
Sbjct: 60 FFAAFAAPPILPAMRPALVLAPSDASAAAVASLS 93
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 128 SSISPRRLHHNSWYAQRNRNRSSESPR 208
S +SP R HH+S ++R+R+RS E R
Sbjct: 652 SKLSPTRDHHSSRRSRRSRSRSQEKNR 678
>07_03_1727 +
29068348-29068571,29069473-29069514,29069593-29069839,
29069936-29070013,29070551-29070736,29070829-29071126,
29071775-29072244
Length = 514
Score = 29.5 bits (63), Expect = 1.7
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Frame = +3
Query: 78 RLVAVTGCDSGLGWAVAARLAREGFITIAGMHKGIETEAAKALEKLCAHT-------FPL 236
RL VTG + G+G V +LA +G I E A+E LC + L
Sbjct: 89 RLAVVTGGNRGIGLEVCRQLALQGVTVILTARD--EKRGKDAVESLCHESNLSNIIFHQL 146
Query: 237 DVTRVESVQEFRKYVLTVLKDNPKY-KFHAVVNNAGV 344
D+ S +Y+ N ++ K +VNNAGV
Sbjct: 147 DILDGNSRASLARYI------NSRFGKLDILVNNAGV 177
>11_04_0393 +
17185845-17186042,17189342-17189534,17190513-17190598,
17191123-17191254,17191930-17192094,17192397-17192687
Length = 354
Score = 29.1 bits (62), Expect = 2.3
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Frame = +3
Query: 78 RLVAVTGCDSGLGWAVAARLAREGFITIAGMHKGIETEA-AKALEKLCAH---TFPLDVT 245
++V VTG SG+G + A++G I A AK L A P D+T
Sbjct: 53 KVVLVTGASSGIGEHLVYEYAKKGACVALTARTEIALRAVAKTARDLGAPDVLVVPADIT 112
Query: 246 RVESVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTVGKYEWMT-ASMIESPVHVNLLGAM 422
+V+ + R TV K + +V NAG+ + +E +T + + + +N GA+
Sbjct: 113 KVDDAK--RAVEETVAHFG---KLNHLVANAGIWSSCFFEEITNITAFHNVIDLNFWGAV 167
Query: 423 RVISAFLPEIR 455
LP ++
Sbjct: 168 YPTYFALPYLK 178
>08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426
Length = 284
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 78 RLVAVTGCDSGLGWAVAARLAREGFITIAGMHK 176
R+V VTG SGLG LAR G + +A +
Sbjct: 23 RVVLVTGASSGLGREFCLDLARAGCLVVAAARR 55
>08_01_0966 +
9751198-9751530,9752182-9752337,9753145-9753240,
9753599-9753719,9754027-9754196
Length = 291
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 105 SGLGWAV---AARLAREGFITIAGMHKGIETEAAKALEKLCAHTF 230
+GLG+A+ + +LARE IT +H I EAA+ L C +
Sbjct: 218 NGLGYALVDKSKKLAREWGITDLYVHVAINNEAAQKLYNKCGFVY 262
>05_01_0292 - 2285238-2286023,2286094-2286210
Length = 300
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +3
Query: 78 RLVAVTGCDSGLGWAVAARLAREG----FITIAGMHKGIETEAAKALEKLCAHT 227
++ VTG DSG+G AV A EG F + G + E +AL + A T
Sbjct: 41 KVAIVTGGDSGIGRAVCLCFALEGATVAFTYVKGQEEKDAEETLRALRDIRART 94
>10_08_0571 -
18855317-18855541,18855667-18855747,18855849-18855963,
18856061-18856224,18856307-18856540,18856626-18856781,
18857113-18857244,18857850-18857984,18858071-18858457,
18858708-18858826,18858914-18859124,18859268-18859339,
18859542-18859628,18859993-18860127,18860240-18860368
Length = 793
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/36 (25%), Positives = 23/36 (63%)
Frame = -1
Query: 416 AEQIHMNRAFYHRCCHPFVLSYCHNSSVVDHGMKFI 309
A+ I+M+ +F++ C P + +Y H+ +++ ++I
Sbjct: 473 AQAIYMSGSFFNHSCRPNIHAYFHSRTLILRSTEYI 508
>07_01_0500 + 3744062-3744847
Length = 261
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/56 (32%), Positives = 23/56 (41%)
Frame = +3
Query: 78 RLVAVTGCDSGLGWAVAARLAREGFITIAGMHKGIETEAAKALEKLCAHTFPLDVT 245
R+ VTG G+G A+A LA G + G A A E A DV+
Sbjct: 20 RVAIVTGASRGIGRAIAIHLASLGASVVVGYASSSGPAEALAAELPSAVAVKADVS 75
>03_01_0641 -
4697273-4697672,4697921-4698102,4698218-4698403,
4699287-4699385,4700028-4700144,4700698-4700814
Length = 366
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = -1
Query: 215 QFFEGFRCFGFYSFVHTSYCDEAFSG*SSCYCPTESTITPCYSYKTANGHRAD 57
QF EG R FG +F +T YC+ C P + Y+ + G D
Sbjct: 15 QFPEGERYFGLENFGNTCYCNSVLQALYFC-VPFREQLLEYYANNKSTGDVED 66
>02_05_0093 +
25753021-25753061,25753159-25753402,25753843-25753905,
25753985-25754179,25754489-25754893
Length = 315
Score = 27.5 bits (58), Expect = 6.9
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Frame = +3
Query: 78 RLVAVTGCDSGLGWAVAARLAREG---FITIAGMHKGIETEAA---KALEKLCAHTFPLD 239
R+ VTG + GLG + +LA G +T +G AA L ++ H F D
Sbjct: 14 RVAVVTGGNKGLGLEICKQLAANGVTVVLTARSEERGAGAAAALRQLGLSEVLFHQF--D 71
Query: 240 VTRVESVQEFRKYVLTVLKDNPKYKFHAVVNNAGVMTV 353
V+ S ++ + K +VNNAG++ V
Sbjct: 72 VSEPSSAAGLADFI-----KHKFGKLDILVNNAGILGV 104
>09_04_0404 +
17322664-17322718,17323676-17323849,17324695-17324876,
17325312-17325417,17325708-17325784,17326485-17326572,
17327320-17327509,17328353-17328479,17328584-17328664,
17328815-17328916,17329042-17329137,17329279-17329353,
17329746-17329865,17330319-17330447,17330762-17330839,
17331330-17331416,17333538-17333651,17334294-17334362,
17334741-17334785
Length = 664
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 90 VTGCDSGLGWAVAARLAREG-FITIAGMHKGIETEAAKALE 209
VTG SG+G A+ LA++G F+T+ + EAA ++
Sbjct: 11 VTGGGSGIGKALCIALAQKGLFVTVVDFSEENGREAASLVQ 51
>07_03_0894 + 22362717-22363514
Length = 265
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 78 RLVAVTGCDSGLGWAVAARLAREGFITIAG 167
R+ VTG G+G A+AA L+ G + G
Sbjct: 24 RVAIVTGASRGIGRAIAAHLSALGASVVVG 53
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 441 LPEIRKTAIETTSKPKPRIINVGSHC 518
+P+++ TA+ T + RI+N G C
Sbjct: 95 IPKMKVTALRFTETARARIVNAGGEC 120
>03_01_0585 - 4331111-4331850,4331960-4332224
Length = 334
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = -2
Query: 205 RAFAASVSIPLCIPAIVMKPSRANRAATAQPSPLSHPVTATRR 77
R A V+ P PA +P R N ATA P P + P A R
Sbjct: 158 RGSKAKVNFP-ATPAAA-RPRRGNTRATAVPPPATAPAAAPPR 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,934,315
Number of Sequences: 37544
Number of extensions: 256356
Number of successful extensions: 871
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -