Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331H05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.82 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.82 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   4.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   5.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = +3

Query: 162  AGMHKGIETEAAKALEKLCAHTFPLDVTRVESVQEFRKYVLTVLKDNPKYKFHAV 326
            AG    +E  A  + E L   + PL   R   +Q F          NP Y F +V
Sbjct: 1007 AGPPINLEARALSSSEILITWSPPLPELRHGDIQGFNVGYRETSSSNPSYNFSSV 1061


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = +3

Query: 162  AGMHKGIETEAAKALEKLCAHTFPLDVTRVESVQEFRKYVLTVLKDNPKYKFHAV 326
            AG    +E  A  + E L   + PL   R   +Q F          NP Y F +V
Sbjct: 1003 AGPPINLEARALSSSEILITWSPPLPELRHGDIQGFNVGYRETSSSNPSYNFSSV 1057


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 426 LSSRRANSHEPGFLSSMLSSIRT 358
           LSS  ++ HEPG  ++ +++I T
Sbjct: 641 LSSTHSHPHEPGAPATTITTITT 663


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 407 IHMNRAFYHRCCHPFVLS 354
           +++ RAF   C HP V S
Sbjct: 28  MYLVRAFCRNCIHPTVFS 45


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 407 IHMNRAFYHRCCHPFVLS 354
           +++ RAF   C HP V S
Sbjct: 476 MYLVRAFCRNCIHPTVFS 493


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 330 NNAGVMTVGKYEWMTASMIESPVHVNLLGAMRVI 431
           NNA + T      +T +   +PV +N+ G   +I
Sbjct: 526 NNAKIYTSSVNSNLTVNQTVNPVAINIPGDTSII 559


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 138 AREGFITIAGMHKGI 182
           A EGF  +  MH G+
Sbjct: 160 ANEGFCAVISMHDGL 174


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 138 AREGFITIAGMHKGI 182
           A EGF  +  MH G+
Sbjct: 155 ANEGFCAVISMHDGL 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,829
Number of Sequences: 438
Number of extensions: 2887
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)