Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331H02f
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70...    29   1.8  
01_01_0088 + 688792-691441,691629-693013                               29   1.8  
12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834...    27   9.5  
10_08_0342 + 16956776-16957056,16958667-16958738,16959146-169592...    27   9.5  

>01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-708105,
            708462-708702,708783-708857,708932-709017,709451-709523,
            709637-709961,710092-711750,711938-713322
          Length = 1788

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 51   LTIYVNYPHIIYNKFGYKIKLMIIKINMYTAFKVC 155
            L I++N PH + + F   + L  +KI     FKVC
Sbjct: 1106 LFIFMNSPHSLPDNFSKLVHLRYLKIGSPWGFKVC 1140


>01_01_0088 + 688792-691441,691629-693013
          Length = 1344

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 51  LTIYVNYPHIIYNKFGYKIKLMIIKINMYTAFKVC 155
           L I++N PH + + F   + L  +KI     FKVC
Sbjct: 662 LFIFMNSPHSLPDNFSKLVHLRYLKIGSPWGFKVC 696


>12_02_0667 +
           21682386-21682944,21683042-21683201,21683419-21683467,
           21683570-21683683,21683794-21684294,21684594-21684980,
           21685074-21685172,21685380-21685478,21685817-21685890,
           21686387-21687023
          Length = 892

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 84  YNKFGYKIKLMIIKINMYTAFKVCCVCIYISATF 185
           +N F Y   L +I   +Y AF V  VC+YI+ T+
Sbjct: 556 FNMFWYSHHLFVI---VYIAFVVHGVCLYINRTW 586


>10_08_0342 +
           16956776-16957056,16958667-16958738,16959146-16959254,
           16959588-16959632
          Length = 168

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 340 LTNVHMVQLLRHQCMVRTDTV-AVSAAL 420
           LTNV++ QLLR Q  ++ +T  A+ AA+
Sbjct: 36  LTNVYVAQLLRRQAQLKPETAPALRAAV 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,744,752
Number of Sequences: 37544
Number of extensions: 201016
Number of successful extensions: 436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)