Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331H02f
         (457 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3899|ABI31114.1|  156|Drosophila melanogaster CG13586-P...    29   3.9  
AF231134-1|AAF36977.1|  472|Drosophila melanogaster cyclin-depen...    27   9.1  
AF154416-1|AAD38395.1|  474|Drosophila melanogaster Cdk5 activat...    27   9.1  
AE014134-1830|AAF52906.1|  472|Drosophila melanogaster CG5387-PA...    27   9.1  

>AE013599-3899|ABI31114.1|  156|Drosophila melanogaster CG13586-PB,
           isoform B protein.
          Length = 156

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 241 CYYFFRCIIFHRVCLVGCFIYTKY 312
           CY  FR    HR+C   CF++  +
Sbjct: 96  CYQLFRETSIHRLCKANCFVHETF 119


>AF231134-1|AAF36977.1|  472|Drosophila melanogaster
           cyclin-dependent kinase 5 regulatorysubunit protein.
          Length = 472

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 218 YLHGTDVLENNKSSGNINTYTTNF 147
           Y H TD+   N S+G+I+++  NF
Sbjct: 24  YNHSTDMRNENDSTGSIDSHLNNF 47


>AF154416-1|AAD38395.1|  474|Drosophila melanogaster Cdk5
           activator-like protein protein.
          Length = 474

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 218 YLHGTDVLENNKSSGNINTYTTNF 147
           Y H TD+   N S+G+I+++  NF
Sbjct: 24  YNHSTDMRNENDSTGSIDSHLNNF 47


>AE014134-1830|AAF52906.1|  472|Drosophila melanogaster CG5387-PA
           protein.
          Length = 472

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 218 YLHGTDVLENNKSSGNINTYTTNF 147
           Y H TD+   N S+G+I+++  NF
Sbjct: 24  YNHSTDMRNENDSTGSIDSHLNNF 47


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,225,462
Number of Sequences: 53049
Number of extensions: 392637
Number of successful extensions: 883
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1497419784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)