Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331H02f
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80440-3|AAK21470.2|  380|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine r...    27   6.5  
Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z50797-5|CAA90675.1|  342|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U97008-16|AAB52300.1|  303|Caenorhabditis elegans Serpentine rec...    27   8.6  

>U80440-3|AAK21470.2|  380|Caenorhabditis elegans Hypothetical
           protein T21E12.2 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 191 NNKSSGNINTYTTNFKC-CVHIYFNYH*FYFIAKLIIYNVR 72
           +NK   N+ T TT F    + + F YH F+ +A L+  N+R
Sbjct: 315 HNKIEKNLATTTTTFLLHSMLLLFLYHFFFLLALLLQTNIR 355


>Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical
           protein W01D2.4 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 51  LTIYVNYPHIIYNKFGYKIKLMIIKINMYTAFKVCCVCIYISATFIIFK 197
           L +Y++Y  +I+ KFGY   + + K      F+   +CI+ +    I++
Sbjct: 215 LYLYLSY-RLIF-KFGYSTSMWLYKTKRQIIFQAISLCIFHATAAFIYE 261


>AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine
           receptor, class t protein8 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 51  LTIYVNYPHIIYNKFGYKIKLMIIKINMYTAFKVCCVCIY 170
           L  Y++Y H+++ KFGY   + + K      F+   +C++
Sbjct: 213 LYFYLSY-HLLF-KFGYSTSIWLYKTRRQIIFQALMLCVF 250


>Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical
           protein ZK1067.4 protein.
          Length = 541

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
 Frame = +3

Query: 117 IIKINMYTAFKVCCVCIYISATFIIFKNICAM*VHCQS*CIVLLFF*M------YNFSPS 278
           I ++   T +  C VC  +      +   C +     S    LL +        YNF P 
Sbjct: 19  IFRVLRRTGYGKCLVCSLLLILCFFYATFCHVKHEAYSGSQPLLIYQHGPCAQGYNFVPI 78

Query: 279 VFGRLLYLYKIFE 317
           VFG +LY+  + E
Sbjct: 79  VFGLMLYIVYLME 91


>Z50797-5|CAA90675.1|  342|Caenorhabditis elegans Hypothetical
           protein T22H6.4 protein.
          Length = 342

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 9/41 (21%)
 Frame = +2

Query: 149 SLLCMYLYFRYF--------YYFQE-HLCHVGTLPIVVYCA 244
           SLL ++ ++RY         YYF E H+C+   L I ++ A
Sbjct: 101 SLLALHFFYRYIAVCKPEKMYYFDEKHICYTFVLSIFIFVA 141


>U97008-16|AAB52300.1|  303|Caenorhabditis elegans Serpentine
           receptor, class sx protein24 protein.
          Length = 303

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 182 FYYFQEHLCHVGTLPIVVYCAIIFLDV*FFTECVWSVAL 298
           +YY    LC + +L +V +C  +F      T C+ S AL
Sbjct: 121 YYYLMVTLCALISL-LVTFCKFVFYSDEVVTNCLLSTAL 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,321,821
Number of Sequences: 27780
Number of extensions: 223895
Number of successful extensions: 676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)