Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331H02f
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               25   0.39 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   1.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   2.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   3.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   6.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.3  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   6.3  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   8.4  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 25.0 bits (52), Expect = 0.39
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 194 ENNKSSGNINTYTTNFKCCV 135
           E + S GNI  Y TN+ C +
Sbjct: 60  EEDISEGNIKKYLTNYSCFI 79


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 197 LENNKSSGNINTYTTNFKCCVHIYFNYH*FYFIAKLIIYNVRVV 66
           L NN    N N Y  N+    +   NY+  Y   K + YN+  +
Sbjct: 318 LSNNYKYSNYNNYNNNYNNYNNYNNNYNNNY---KKLYYNINYI 358


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = +2

Query: 353 IWYSYCVTNVWYEQTQLRSQQPY 421
           IW + CV NV +      +  P+
Sbjct: 327 IWITVCVLNVHFRSPSTHNMSPW 349


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = -3

Query: 215 LHGTDVLENNKSSGNINTY-TTNFKCCVHIYFN 120
           +H  +   NN  + N N Y   N+     +Y+N
Sbjct: 323 IHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYYN 355


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 45  NYLTIYVNYPHIIYNKFGYKIKLMIIKINMYTAF 146
           NY   Y+N+ + + NK  Y I+   I +N Y  F
Sbjct: 204 NYSGWYLNHDYNLENKLNYFIE--DIGLNTYYFF 235


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +3

Query: 303 YKIFEIAIPICNSYKRSYGTVIASPMYGTNRHSCGLSSPIRCPTRH 440
           Y +F   IP C     S+ +    P     R + G++S +   T+H
Sbjct: 246 YYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQH 291


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = -2

Query: 300 NKATDQTHSVKNYTSKKIIAQYTTIGNVP 214
           NK     ++  NY +KK+      I  +P
Sbjct: 309 NKTIHNNNNYNNYNNKKLYYNINYIEQIP 337


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 126 INMYTAFKVCCVCIYISA 179
           +N Y  FK+   CI++++
Sbjct: 58  LNAYVRFKLVTDCIFVTS 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,056
Number of Sequences: 438
Number of extensions: 3531
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)