Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331G08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 228 3e-61
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 160 1e-40
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 151 6e-38
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 139 2e-34
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 136 2e-33
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 128 5e-31
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 103 1e-23
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 87 1e-18
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 87 2e-18
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 84 1e-17
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 79 3e-16
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 77 1e-15
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 75 9e-15
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 75 9e-15
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 71 1e-13
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 64 2e-11
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 56 3e-09
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 41 1e-04
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 29 0.56
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.0
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 26 3.9
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 25 6.8
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 6.8
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch... 25 6.8
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.0
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 228 bits (558), Expect = 3e-61
Identities = 109/147 (74%), Positives = 124/147 (84%)
Frame = -1
Query: 500 TKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKI 321
TKRFDSEKAGDREVQRTMLELLNQLDGFSS +KVIAATNRVD LDPALLRSGRLDRK+
Sbjct: 292 TKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKL 351
Query: 320 EFPHPNEEARARIMQIHSRKMNVSPDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRSA 141
EFP PNEEAR I++IHSRKM + D+N+EEL+RSTD++NGA K+VCVEAGMIALR+
Sbjct: 352 EFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAMLKSVCVEAGMIALRQGD 411
Query: 140 TAVTHEDFMDAILEVQAKKKANLSYYA 60
T + HE FMD ILEVQ +K L Y+A
Sbjct: 412 TKINHEHFMDGILEVQMRKSKTLQYFA 438
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 160 bits (388), Expect = 1e-40
Identities = 80/139 (57%), Positives = 101/139 (72%), Gaps = 1/139 (0%)
Frame = -1
Query: 500 TKRFDSEK-AGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRK 324
+ R DS +GD EVQRTMLELLNQLDGF +T +IKVI ATNR+DILDPALLR GR+DRK
Sbjct: 252 SSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRK 311
Query: 323 IEFPHPNEEARARIMQIHSRKMNVSPDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRS 144
IEFP P+ EARA I++IHSR MN++ ++ + ++ + +GA+ K VC EAGM ALR
Sbjct: 312 IEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFALRER 371
Query: 143 ATAVTHEDFMDAILEVQAK 87
VT EDF A+ +V K
Sbjct: 372 RVHVTQEDFELAVAKVLNK 390
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 151 bits (366), Expect = 6e-38
Identities = 73/132 (55%), Positives = 95/132 (71%), Gaps = 1/132 (0%)
Frame = -1
Query: 500 TKRFDSEKAGDREVQRTMLELLNQLDGF-SSTADIKVIAATNRVDILDPALLRSGRLDRK 324
TKR+D++ +RE+QRTMLELLNQLDGF +S DIKVI ATNR+ LDPAL+R GR+DRK
Sbjct: 298 TKRYDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRK 357
Query: 323 IEFPHPNEEARARIMQIHSRKMNVSPDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRS 144
I F +P+E + +I IH+ KMN+ DVN EEL + DD +GA+ KA+ EAG++ALR
Sbjct: 358 ILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKAIVSEAGLLALRER 417
Query: 143 ATAVTHEDFMDA 108
V +DF A
Sbjct: 418 RMRVVMDDFRQA 429
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 139 bits (337), Expect = 2e-34
Identities = 65/133 (48%), Positives = 90/133 (67%)
Frame = -1
Query: 494 RFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEF 315
RFD GD EVQRTMLEL+ QLDGF +IKV+ ATNR + LD AL+R GR+DRK+EF
Sbjct: 288 RFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEF 347
Query: 314 PHPNEEARARIMQIHSRKMNVSPDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRSATA 135
P+ E RA I++IH++ M + D+ +E ++R GA+ ++VC EAGM A+R
Sbjct: 348 GLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIRARRRV 407
Query: 134 VTHEDFMDAILEV 96
T +DF+DA+ +V
Sbjct: 408 ATEKDFLDAVQKV 420
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 136 bits (329), Expect = 2e-33
Identities = 67/139 (48%), Positives = 87/139 (62%)
Frame = -1
Query: 497 KRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIE 318
+RF + DRE+QRT++ELLNQ+DGF K+I ATNR D LDPALLR GRLDRKIE
Sbjct: 240 RRFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIE 299
Query: 317 FPHPNEEARARIMQIHSRKMNVSPDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRSAT 138
P PNE R I++IH K++ ++++E L + TD NGA + V EAG IA++
Sbjct: 300 IPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRD 359
Query: 137 AVTHEDFMDAILEVQAKKK 81
V D M A +V KK
Sbjct: 360 YVIQSDLMSAARKVADLKK 378
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 128 bits (309), Expect = 5e-31
Identities = 66/148 (44%), Positives = 94/148 (63%), Gaps = 1/148 (0%)
Frame = -1
Query: 500 TKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKI 321
TKRFD++ DREVQR ++ELL Q+DGF A++KVI ATNR D LDPALLR GRLDRKI
Sbjct: 241 TKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKI 300
Query: 320 EFP-HPNEEARARIMQIHSRKMNVSPDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRS 144
EFP + + R + Q + KM +SP+V+ + D +GAQ A+ +AG++A+R+S
Sbjct: 301 EFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKS 360
Query: 143 ATAVTHEDFMDAILEVQAKKKANLSYYA 60
+ D +A +A K ++ +A
Sbjct: 361 RGVILQSDIEEAY--ARAVKPTDMEQFA 386
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 103 bits (248), Expect = 1e-23
Identities = 55/145 (37%), Positives = 87/145 (60%), Gaps = 3/145 (2%)
Frame = -1
Query: 485 SEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHP 306
+ + D R + LLN+LDG + ++ V+AATNR D++DPAL+R GRLDR + P
Sbjct: 655 ANRGEDNSSDRVVAALLNELDGIEALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPP 714
Query: 305 NEEARARIMQIHSRKMNVSPDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRR--SATAV 132
N EAR +I++I + KM + DV+ + ++ T+ +GA+ A+C EAG+IA+ A +
Sbjct: 715 NFEARKQIVKIQAEKMKFAEDVDLDLIAEKTEGCSGAEVVALCQEAGLIAMHEDLEAKEI 774
Query: 131 THEDFMDAILEV-QAKKKANLSYYA 60
F A+L + +A + L YYA
Sbjct: 775 CQAHFKTALLALRKAITRDMLEYYA 799
Score = 68.1 bits (159), Expect = 7e-13
Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Frame = -1
Query: 455 RTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQ 276
R + LL LDG ++ + VIAATNR + +D AL R GRL+++IE P++ AR I++
Sbjct: 398 RAVATLLTLLDGMANAGKVVVIAATNRPNSIDEALRRPGRLEKEIEIGIPDKSARLDIIK 457
Query: 275 -IHSRKMNVSPDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRSATAVTHEDFMDAILE 99
+ S N D E+L+ T + GA AV EA + A++R+ + +D
Sbjct: 458 LLLSGVPNEINDAQLEDLASRTHAYVGADLAAVVREAALRAIKRTISLQKDTSGLDIFGA 517
Query: 98 VQ 93
VQ
Sbjct: 518 VQ 519
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 87.4 bits (207), Expect = 1e-18
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Frame = -1
Query: 464 EVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARAR 285
E + T+ +LL ++DGF+S+ I V A TNR D+LDPALLR GR DR+I P+ R +
Sbjct: 415 ERESTLNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQ 474
Query: 284 IMQIHSRKMNVSPDVNF--EELSRSTDDFNGAQCKAVCVEAGMIALRRSATAVTHEDFMD 111
I ++H + + + +++ + L+ T F GA VC E +IA R ++ V F
Sbjct: 475 IFKVHLKHIKAADNIDLIAKRLAVLTSGFTGADIMNVCNEGALIAARSNSNEVQMVHFEQ 534
Query: 110 AILEVQA 90
AI V A
Sbjct: 535 AIERVTA 541
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 86.6 bits (205), Expect = 2e-18
Identities = 42/126 (33%), Positives = 74/126 (58%), Gaps = 1/126 (0%)
Frame = -1
Query: 482 EKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPN 303
EK +R + +LL +DG + +++ V+AATNR + +DPAL R GR DR+++ P+
Sbjct: 334 EKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPD 393
Query: 302 EEARARIMQIHSRKMNVSPDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRSATAV-TH 126
R I++IH++ M ++ DV+ E+++ T + G+ ++C EA M +R +
Sbjct: 394 PTGRLEILRIHTKNMKLADDVDLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLD 453
Query: 125 EDFMDA 108
ED +DA
Sbjct: 454 EDEIDA 459
Score = 83.8 bits (198), Expect = 1e-17
Identities = 43/104 (41%), Positives = 66/104 (63%)
Frame = -1
Query: 455 RTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQ 276
R + +LL ++DG +S ++ VI ATNR D +DPAL+R GRLD+ I P P+EEAR I+Q
Sbjct: 618 RVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSILQ 677
Query: 275 IHSRKMNVSPDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRS 144
R V+ DV+ ++++T F+GA + V A +A++ S
Sbjct: 678 TQLRHTPVAEDVDLRAVAKATHGFSGADLEFVVQRAVKLAIKDS 721
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 84.2 bits (199), Expect = 1e-17
Identities = 43/100 (43%), Positives = 62/100 (62%), Gaps = 1/100 (1%)
Frame = -1
Query: 440 LLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRK 261
LL +DG + + VI ATNR + LDPAL R GR DR+ FP PN++AR +I++I+S
Sbjct: 501 LLALMDGLDTRGQVVVIGATNRPNDLDPALRRPGRFDREFYFPLPNKQARMKILEINSLH 560
Query: 260 MNVS-PDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRS 144
+ P+ L+ ST + GA KA+C EA + A+RR+
Sbjct: 561 FSPKIPESYLLHLAESTSGYGGADLKALCTEAALNAVRRT 600
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 79.4 bits (187), Expect = 3e-16
Identities = 38/100 (38%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Frame = -1
Query: 440 LLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRK 261
LL +DG S + +I ATNR D +DPAL R GR DR+ FP P+ +AR +I++IH+R
Sbjct: 395 LLALMDGMESRGQVIIIGATNRPDAVDPALRRPGRFDREFYFPLPDRDARKKIIEIHTRN 454
Query: 260 MNVS-PDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRS 144
+ P+ L+ + + GA +A+C EA + +++R+
Sbjct: 455 WDPPVPEWLCSMLAEKSKGYGGADLRALCTEAALNSIKRT 494
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 77.4 bits (182), Expect = 1e-15
Identities = 42/119 (35%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Frame = -1
Query: 497 KRFDSEKAGDREVQRTMLELLNQLDGFSST--ADIKVIAATNRVDILDPALLRSGRLDRK 324
KR +++ +R + L +++L F T + VI ATNR D LD AL R+GR DR+
Sbjct: 282 KRESAQREMERRIVAQFLTCMDELS-FEKTDGKPVLVIGATNRPDSLDSALRRAGRFDRE 340
Query: 323 IEFPHPNEEARARIMQIHSRKMNVSPDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRR 147
I P+++AR +I++ ++ + +S D +F +L++ T + GA KA+ AG+IA++R
Sbjct: 341 ICLTVPSQDAREKILRTMAKGLKLSGDFDFRQLAKQTPGYVGADLKALTAAAGIIAIKR 399
Score = 76.2 bits (179), Expect = 3e-15
Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Frame = -1
Query: 455 RTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQ 276
R + LL +LDG S + + VIAATNR DI+DPA+LR GRLD+ + P+ R I++
Sbjct: 611 RVVNTLLTELDGLSDRSGVYVIAATNRPDIIDPAMLRPGRLDKTLLVDLPDAHERVEILK 670
Query: 275 IHSRKMNVSPDVNFEELSRS--TDDFNGAQCKAVCVEAGMIALRRSATA 135
+++ + +VN + L R +F+GA A+ EA + ALR + A
Sbjct: 671 TLTKQTPLHEEVNLDVLGRDERCSNFSGADLAALVREAAVTALRSAVFA 719
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 74.5 bits (175), Expect = 9e-15
Identities = 48/135 (35%), Positives = 70/135 (51%), Gaps = 7/135 (5%)
Frame = -1
Query: 461 VQRTMLELLNQLDGFSSTADIK----VIAATNRVDILDPALLRSGRLDRKIEFPHPNEEA 294
+++T+ +LL LDGFS D+ I ATN + LDPAL R GR DR I P P+
Sbjct: 383 MRQTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRG 442
Query: 293 RARIMQIHSRKMNVSPDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRSATAVTHEDF- 117
R I+ H+R + + DV+ ++R T F GA + +A + A + +TAV+ D
Sbjct: 443 RLAILLQHTRHVPLGKDVDLSIIARGTSGFAGADLANLINQAAVYASKNLSTAVSMRDLE 502
Query: 116 --MDAILEVQAKKKA 78
D IL +K A
Sbjct: 503 WSKDRILMGAERKSA 517
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 74.5 bits (175), Expect = 9e-15
Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 5/137 (3%)
Frame = -1
Query: 455 RTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQ 276
R + ++L Q+DG S + ++AAT R D++DPALLR GRLD+ I PNEE R ++Q
Sbjct: 725 RVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQ 784
Query: 275 IHSRKMNVSPDVNFEELSRSTDDFNGAQCKAVCVEAGMIAL-----RRSATAVTHEDFMD 111
+ + ++ ++LS TD + A ++ +A +IA+ R S AV
Sbjct: 785 KLANRFHIENAAMLKKLSTLTDGYTYADLSSLLYDAHLIAVHKLLKRVSINAVDPSQTTS 844
Query: 110 AILEVQAKKKANLSYYA 60
+ + + K N S A
Sbjct: 845 SFTNLTTESKRNASMLA 861
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 70.9 bits (166), Expect = 1e-13
Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 5/114 (4%)
Frame = -1
Query: 473 GDREV-QRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEE 297
GD V + + +LL ++DG +I VI TNR D++D ALLR GRL+ +E P+E
Sbjct: 393 GDTGVGDQVVNQLLAKMDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEH 452
Query: 296 ARARIMQIHSRKMN----VSPDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRR 147
R +I++IH+ +M + DV+ EEL+ T +F+GA+ + A A R
Sbjct: 453 GRLQILKIHTSRMASNGILENDVDMEELASLTKNFSGAEIAGLIKSASSFAFYR 506
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 63.7 bits (148), Expect = 2e-11
Identities = 37/125 (29%), Positives = 73/125 (58%), Gaps = 4/125 (3%)
Frame = -1
Query: 494 RFDSEKAGDREVQRTMLELLNQLDGFSSTAD--IKVIAATNRVDILDPALLRSGRLDRKI 321
R +S +G+ + R + +LL +LD S + + VI ATNR D+LDP+LLR GR D+ +
Sbjct: 763 RGNSSDSGN-VMDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLV 821
Query: 320 EFP-HPNEEARARIMQIHSRKMNVSPDVNFEELSRST-DDFNGAQCKAVCVEAGMIALRR 147
+ +EE++A +++ ++ + ++ E++++ +F GA A+C +A + A++R
Sbjct: 822 YLGINKSEESKASMLRALTKTFKLDETIDLNEIAKNCHPNFTGADMYALCSDAVLSAIKR 881
Query: 146 SATAV 132
+
Sbjct: 882 KTNEI 886
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 56.0 bits (129), Expect = 3e-09
Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 3/128 (2%)
Frame = -1
Query: 485 SEKAGDREVQRTM-LELLNQLDGFSST-ADIKVIAATNRVDILDPALLRSGRLDRKIEFP 312
S G+ E R + E L Q++G + + V+ ATN LD A+ R R +++I P
Sbjct: 236 SRSEGESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRR--RFEKRIYIP 293
Query: 311 HPNEEARARIMQIHSRKM-NVSPDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRSATA 135
PN ARAR+ +++ K+ + +F+EL++ TD ++G+ V +A M +RR TA
Sbjct: 294 LPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDISIVVRDAIMEPVRRIHTA 353
Query: 134 VTHEDFMD 111
++ D
Sbjct: 354 THFKEVYD 361
Score = 25.8 bits (54), Expect = 3.9
Identities = 25/70 (35%), Positives = 31/70 (44%)
Frame = +1
Query: 286 LARASSLG*GNSIFLSKRPDLSRAGSKMSTLLVAAMTLMSAVELKPSSWFNNSNIVRCTS 465
LA+A + G++ F DL S LV + M A E KPS F + C S
Sbjct: 178 LAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEM-AREQKPSIIFIDEIDSLCGS 236
Query: 466 RSPAFSESKR 495
RS SES R
Sbjct: 237 RSEGESESSR 246
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 41.1 bits (92), Expect = 1e-04
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = -1
Query: 452 TMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPN-EEARARIMQ 276
T LLN LDG +S+ + + TN + LDPAL+R GR+D K + E+ R +
Sbjct: 323 TFSGLLNALDGVTSSDERIIFMTTNHPEKLDPALVRPGRVDVKAYLGNATPEQVREMFTR 382
Query: 275 IHSRKMNVSPDVN 237
+ ++ D++
Sbjct: 383 FYGHSPEMADDLS 395
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 28.7 bits (61), Expect = 0.56
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Frame = -1
Query: 473 GDREVQRTMLEL---LNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPN 303
G+ VQ+T+L+ LN+L G+SS +K + D L + R IE
Sbjct: 23 GNGSVQQTILQASQRLNELTGYSSIEALKNAVVKQETKLRDFRLSAAEARKRYIEAVEKR 82
Query: 302 EEARARIMQIHSRKMNVSPDVNFEELSR-STDDFNGAQCKAVCVEAGMIALRR 147
++ + ++ R+ + S ++ E ++ DD++ + + E +A RR
Sbjct: 83 SSSQREVNELLQRRSSWS-TIDLERFTKLYRDDYSNKEEEIKAQEDVDVAERR 134
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 3.0
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Frame = +1
Query: 103 SMASIKSS*VTAVAERRNAIIPASTQTALHWAPLKSS--VERDSSSKL-TSGLTFILREW 273
S + SS T+++ ++ IPAS+ +A L SS + SSS L +S T I
Sbjct: 2 SFTNNTSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSS 61
Query: 274 ICIILARASSLG*GNSIFLSKRPDLSRAGSKMSTLLVAAMTLMSAVELKPSS 429
L+ +S +S F++ L + S+ S+ A++T S+ L SS
Sbjct: 62 SSSPLSSSSFTSPASSSFIT---SLVSSSSQQSSSSSASLTSSSSATLTSSS 110
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 24 FIYTNYLYLIQLSIIAKVGLF 86
F+ +Y+Y+I L+IIA + LF
Sbjct: 19 FLAIHYIYIISLTIIASILLF 39
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 25.0 bits (52), Expect = 6.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 121 TLWTPYWRSRLRKRP 77
T+W+P W R +K P
Sbjct: 177 TIWSPAWDERFKKHP 191
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/50 (24%), Positives = 30/50 (60%)
Frame = -1
Query: 212 DDFNGAQCKAVCVEAGMIALRRSATAVTHEDFMDAILEVQAKKKANLSYY 63
D+ + ++ K+ V+ G+IA++ S+ ++ F D L +++ + LS++
Sbjct: 240 DNVDKSKAKSGRVQVGLIAIQLSSGTTVYDHFQDDFL--RSELQTRLSHF 287
>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 332 DRKIEFPHPNEEARARIMQIHSRKMNVSPDVNFEEL 225
D ++EF EAR RI++ R + +N EE+
Sbjct: 35 DFRVEFEKRRIEARNRILESEGRALENKTHLNEEEI 70
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 166 PASTQTALHWAPLKSSVERDSSSKLTSGLTFILREWICIILARASSLG*GNSIFLSKRPD 345
P+S+ ++ +P SS + SSSK +S + + + SS +S S P
Sbjct: 154 PSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPS 213
Query: 346 LSRAGSKMST 375
S++ SK S+
Sbjct: 214 SSKSSSKFSS 223
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,695
Number of Sequences: 5004
Number of extensions: 38541
Number of successful extensions: 175
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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