Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331G07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0871 - 11978725-11978986,11979265-11979422,11979501-119797...    30   0.98 
07_03_0923 - 22617627-22617860,22618486-22618542,22618612-226187...    29   3.0  
08_01_0272 + 2200061-2200078,2200835-2202076,2202201-2202698,220...    28   4.0  
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997...    27   6.9  
01_06_1116 + 34629592-34630578,34631058-34631686,34632589-34632679     27   9.1  

>03_02_0871 -
           11978725-11978986,11979265-11979422,11979501-11979705,
           11979797-11980086,11980539-11980692,11980793-11980881,
           11981567-11981634,11982082-11982352
          Length = 498

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
 Frame = +2

Query: 203 INILQDFIKITSELADAYACKKPFTLTEMHYA--RILLRHLIHPFITSKWVQLEKKDQLD 376
           IN LQD +KI  EL   ++ K PF++  + ++  +  LR ++      K V+  + D   
Sbjct: 155 INSLQDEVKIIRELPQKFSRKVPFSMQPISWSSEKYYLRQILPLVRKHKVVRFSRTDSRL 214

Query: 377 PEFVLNFFVQWVDIDKMHSDEXFAEKIQALVDKVEAIL 490
               L   +Q +     ++   FA  I+AL  K+ + L
Sbjct: 215 ANNGLPLKLQKLRCRVNYNALQFAPSIEALGKKMISAL 252


>07_03_0923 -
           22617627-22617860,22618486-22618542,22618612-22618768,
           22618875-22619014,22619642-22619777,22619874-22620142,
           22620272-22620492,22620648-22620707,22620859-22620915,
           22621008-22621405,22621929-22622000,22622098-22622169,
           22622246-22622317,22622574-22622645,22622738-22622867,
           22623065-22623170
          Length = 750

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 278 LTEMHYARIL-LRHLIHPFITSKWVQLEKKDQLDPEFVLN 394
           LT MH   +L + HLI    T ++ ++ K D++  +FV N
Sbjct: 670 LTRMHEKGLLCIAHLICSVSTGEYTRVHKTDEIQSDFVKN 709


>08_01_0272 +
           2200061-2200078,2200835-2202076,2202201-2202698,
           2203316-2203345
          Length = 595

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 185 MSLAYAINILQDFIKITSELADAYACKKPFTLTEMHYARILLRHLIHPFITSKWVQ 352
           +S A+ + IL  FI ++S  A   A    F  T  H     +  L+HP    +W Q
Sbjct: 308 LSGAFILEILSVFIVVSSFWAYFMATVSDFLCTRCHDVIFSIVKLVHPESKPQWSQ 363


>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
            21500187-21500418,21500488-21500668,21501342-21501438,
            21501641-21501779,21502024-21502351,21502890-21503137,
            21503270-21503543,21504200-21504291,21504451-21504521,
            21505091-21505181,21506526-21507380,21507482-21507594,
            21508007-21508074,21508655-21508835,21509084-21509186,
            21509273-21509379,21510046-21511584,21511661-21511771,
            21511856-21511908,21511988-21512063,21512147-21512366,
            21512477-21512901,21513193-21513372,21513503-21515474
          Length = 2680

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 140  KQDVRDFFNVAISTKMSLAYAINILQDF 223
            K D+ +FF + +  KMS+A   N LQ F
Sbjct: 2192 KDDITEFFRLPLQEKMSVAIPPNGLQGF 2219


>01_06_1116 + 34629592-34630578,34631058-34631686,34632589-34632679
          Length = 568

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 303 ILA*CISVKVNGFLHAYASASSLVIFIKS*RMLI 202
           ++A C S+++NG+LH +  +      IK  R+L+
Sbjct: 468 VVAGCSSIEINGYLHKFVVSDDSHPEIKEIRLLL 501


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,654,657
Number of Sequences: 37544
Number of extensions: 207926
Number of successful extensions: 401
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)