Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331G07f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z47812-10|CAH04720.1| 979|Caenorhabditis elegans Hypothetical p... 29 2.0
Z47812-6|CAC70105.1| 984|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z47812-5|CAA87792.1| 980|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z50006-2|CAD44148.1| 523|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z50006-1|CAA90301.1| 190|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z73103-5|CAA97422.1| 380|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical pr... 28 4.7
X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein. 28 4.7
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z81079-3|CAB03083.2| 588|Caenorhabditis elegans Hypothetical pr... 27 8.1
>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical protein
T26A5.5a protein.
Length = 1076
Score = 29.9 bits (64), Expect = 1.2
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Frame = +2
Query: 164 NVAISTKMSLAYAINILQDFIKI-TSELADAYACKKPFTLTEMHYARILLRHLIHPFITS 340
++ I +S Y + + +K+ T +L AY +K E+H + L + I P S
Sbjct: 741 SIQIDPVVSNPYNYDPRMEMMKLGTGQLKSAY--RKTKNNVELHIEKNLYK--IEPKRGS 796
Query: 341 KWVQLEKKDQLDPEFVLNFFVQWVDIDKMHSDEXFAEKIQALVDKVEAILSDXKYSKSDS 520
+ ++ ++PE F + DI++ ++D +K K EAI D + S S
Sbjct: 797 EEGSQSREQSMEPEHSTPVFTTFDDINEANNDHYDGQKPPTKRAKYEAISVDTYETPSSS 856
>Z47812-10|CAH04720.1| 979|Caenorhabditis elegans Hypothetical
protein T05H10.5c protein.
Length = 979
Score = 29.1 bits (62), Expect = 2.0
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Frame = +2
Query: 86 SELKTMSPTHYCKRDDLTKQDVRDFFNVAISTKMSLAYAINILQDFI-KITSELADAYAC 262
S+L T +C + +D DF+ AIS M L N D+I ++T +
Sbjct: 554 SQLPTEVSQMFCALPEYFLEDALDFYIFAISNGMKLLMERN--ADWISRLTVLFTQYHYI 611
Query: 263 KKPFTLTEMHYARILLRHLIHPFITSKWVQLEKKDQLDPEFVLNFFVQWVDIDKMHSDEX 442
K PF ++++ R+L I P + V+L + ++ F+ + D +
Sbjct: 612 KSPFLVSKL--VRVL--SSIQPPLWFNVVRLRMAQENLLMCMIKFYSDFEDNGDFYEKFN 667
Query: 443 FAEKIQALVDKVE 481
IQ +++K+E
Sbjct: 668 VRGNIQYMLEKME 680
>Z47812-6|CAC70105.1| 984|Caenorhabditis elegans Hypothetical
protein T05H10.5b protein.
Length = 984
Score = 29.1 bits (62), Expect = 2.0
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Frame = +2
Query: 86 SELKTMSPTHYCKRDDLTKQDVRDFFNVAISTKMSLAYAINILQDFI-KITSELADAYAC 262
S+L T +C + +D DF+ AIS M L N D+I ++T +
Sbjct: 559 SQLPTEVSQMFCALPEYFLEDALDFYIFAISNGMKLLMERN--ADWISRLTVLFTQYHYI 616
Query: 263 KKPFTLTEMHYARILLRHLIHPFITSKWVQLEKKDQLDPEFVLNFFVQWVDIDKMHSDEX 442
K PF ++++ R+L I P + V+L + ++ F+ + D +
Sbjct: 617 KSPFLVSKL--VRVL--SSIQPPLWFNVVRLRMAQENLLMCMIKFYSDFEDNGDFYEKFN 672
Query: 443 FAEKIQALVDKVE 481
IQ +++K+E
Sbjct: 673 VRGNIQYMLEKME 685
>Z47812-5|CAA87792.1| 980|Caenorhabditis elegans Hypothetical
protein T05H10.5a protein.
Length = 980
Score = 29.1 bits (62), Expect = 2.0
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Frame = +2
Query: 86 SELKTMSPTHYCKRDDLTKQDVRDFFNVAISTKMSLAYAINILQDFI-KITSELADAYAC 262
S+L T +C + +D DF+ AIS M L N D+I ++T +
Sbjct: 555 SQLPTEVSQMFCALPEYFLEDALDFYIFAISNGMKLLMERN--ADWISRLTVLFTQYHYI 612
Query: 263 KKPFTLTEMHYARILLRHLIHPFITSKWVQLEKKDQLDPEFVLNFFVQWVDIDKMHSDEX 442
K PF ++++ R+L I P + V+L + ++ F+ + D +
Sbjct: 613 KSPFLVSKL--VRVL--SSIQPPLWFNVVRLRMAQENLLMCMIKFYSDFEDNGDFYEKFN 668
Query: 443 FAEKIQALVDKVE 481
IQ +++K+E
Sbjct: 669 VRGNIQYMLEKME 681
>Z50006-2|CAD44148.1| 523|Caenorhabditis elegans Hypothetical
protein T07C5.1c protein.
Length = 523
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -2
Query: 292 MHFSQSKWFFACICICQFTSYFY---KILKNVDSIGQTH 185
MH+SQ +W F C+ S+ KIL SI ++H
Sbjct: 1 MHYSQMRWMFFCLTALLHGSFIVNAAKILVYCPSISKSH 39
>Z50006-1|CAA90301.1| 190|Caenorhabditis elegans Hypothetical
protein T07C5.1b protein.
Length = 190
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -2
Query: 292 MHFSQSKWFFACICICQFTSYFY---KILKNVDSIGQTH 185
MH+SQ +W F C+ S+ KIL SI ++H
Sbjct: 1 MHYSQMRWMFFCLTALLHGSFIVNAAKILVYCPSISKSH 39
>Z73103-5|CAA97422.1| 380|Caenorhabditis elegans Hypothetical
protein C08F8.6 protein.
Length = 380
Score = 27.9 bits (59), Expect = 4.7
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 77 YVFSELKTMSPTHYCKRDDLTKQDVRDFFNVAISTKMSLAYA-INILQDFIKITSELADA 253
YV +ELK H+C +D K V D FN + T + L+ A + + K + A +
Sbjct: 60 YVLNELKKAGGRHFCNIED--KGQV-DNFNYVVMTFVGLSLADLRAISPTKKFSMGTAIS 116
Query: 254 YACKKPFTLTEMH 292
A + L +MH
Sbjct: 117 IARQSLEALEDMH 129
>Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical
protein F17E5.1a protein.
Length = 961
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +2
Query: 212 LQDFIKITSELADAYACKKPFTLTEMHYARILLRHLIHPFITSKWVQLEKKDQLDPEFVL 391
+ + I+I L Y C+ T+ +HY I+ ++ I + VQ + E+V+
Sbjct: 64 IDEEIRICQNLQHPYICRLEKTINSVHYRHIIFENMEGNDICFEIVQRASNGFVFSEYVV 123
Query: 392 NFFV-QWVD-IDKMHS 433
+ + Q +D +D H+
Sbjct: 124 SHYTRQLLDALDYCHT 139
>X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein.
Length = 961
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +2
Query: 212 LQDFIKITSELADAYACKKPFTLTEMHYARILLRHLIHPFITSKWVQLEKKDQLDPEFVL 391
+ + I+I L Y C+ T+ +HY I+ ++ I + VQ + E+V+
Sbjct: 64 IDEEIRICQNLQHPYICRLEKTINSVHYRHIIFENMEGNDICFEIVQRASNGFVFSEYVV 123
Query: 392 NFFV-QWVD-IDKMHS 433
+ + Q +D +D H+
Sbjct: 124 SHYTRQLLDALDYCHT 139
>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical
protein C49C3.4 protein.
Length = 1566
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 80 VFSELKTMSPTHYCKRDDLTKQDVRDFFNVAISTKMSLAYAINIL 214
VF+ + + HY +D DV FN I+ M +Y N+L
Sbjct: 755 VFNRIAAQTNGHYIVANDTIGVDVNSDFNKIIANFMKTSYNQNLL 799
>Z81079-3|CAB03083.2| 588|Caenorhabditis elegans Hypothetical
protein F39H11.3 protein.
Length = 588
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 80 VFSELKTMSPTHYCKRDDLTKQD 148
+F+EL T P +CK +D+ Q+
Sbjct: 232 IFAELLTAEPLFFCKEEDIKAQN 254
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,061,795
Number of Sequences: 27780
Number of extensions: 218917
Number of successful extensions: 495
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -