Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331G06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0077 - 637470-638114                                             31   0.42 
11_01_0076 - 600256-600897                                             31   0.42 
03_02_0341 - 7643426-7643973,7644340-7644505                           31   0.74 
03_01_0230 + 1811071-1811236,1811346-1811458,1811566-1811744,181...    28   4.0  
06_03_0306 - 19396423-19397112,19397645-19397916,19398047-19398215     28   5.2  
04_04_1376 + 33058306-33059763,33059851-33059991,33060594-330606...    27   6.9  
03_05_0532 - 25322822-25322932,25323018-25323050,25323187-253232...    27   6.9  

>12_01_0077 - 637470-638114
          Length = 214

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 84  SPNMSHHRELNDRDVNNADVTLFKNIPS 167
           SP ++ HR LN R  + A   LF+NIPS
Sbjct: 20  SPRITGHRHLNVRSPSAAAAVLFRNIPS 47


>11_01_0076 - 600256-600897
          Length = 213

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 84  SPNMSHHRELNDRDVNNADVTLFKNIPS 167
           SP ++ HR LN R  + A   LF+NIPS
Sbjct: 20  SPRITGHRHLNVRSPSAAAAVLFRNIPS 47


>03_02_0341 - 7643426-7643973,7644340-7644505
          Length = 237

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 369 PLHKYHSVRPLHKYHSVRPLHKY-HSVRPLHKYHXVRPLHKYHSVR-PLHK 515
           P HK+H    LH    V P H + HS+ P+H+     P HK   V  P HK
Sbjct: 159 PFHKHHHHIVLHPPVIVPPKHDHDHSLPPVHEPPVTVPDHKPAPVTVPDHK 209


>03_01_0230 +
           1811071-1811236,1811346-1811458,1811566-1811744,
           1812024-1812156,1812216-1812494
          Length = 289

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 57  AVLVKFCFGSPNMSHHREL 113
           AV V+ CFGS ++SHH  L
Sbjct: 2   AVSVRCCFGSSSLSHHARL 20


>06_03_0306 - 19396423-19397112,19397645-19397916,19398047-19398215
          Length = 376

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 372 LHKYHSVRPLHKYHSVRPLHKYHSVRPLHKYHXVRPLHKY 491
           LH +H   P  + H     HK+      H +H ++P H Y
Sbjct: 180 LHHHHHPFPPAQLHGGAADHKHDGAGGHHHHHLMQPHHHY 219



 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 399 LHKYHSVRPLHKYHSVRPLHKYHXVRPLHKYHSVRPLHKY 518
           LH +H   P  + H     HK+      H +H ++P H Y
Sbjct: 180 LHHHHHPFPPAQLHGGAADHKHDGAGGHHHHHLMQPHHHY 219


>04_04_1376 +
           33058306-33059763,33059851-33059991,33060594-33060644,
           33061094-33061171,33061245-33061388,33061871-33062002
          Length = 667

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 162 PSAFLLRHQK-WDHMPPPLSNNLE 230
           PS+  +RH   W+H PPP  ++ +
Sbjct: 327 PSSSTIRHSNSWNHQPPPFQSSFD 350


>03_05_0532 -
           25322822-25322932,25323018-25323050,25323187-25323222,
           25323301-25323336,25323431-25323479,25323671-25323762,
           25323899-25323984,25324098-25324261,25325573-25325601,
           25325697-25325807,25326471-25326512,25326597-25326647,
           25326848-25326898,25327325-25327382,25327823-25327908,
           25328008-25328056,25328155-25328273,25328504-25328590,
           25328726-25328787,25329222-25329290,25329884-25330133
          Length = 556

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 82  EAQT*VIIENLMTVTSTMLTSHFLKTFLQRFSSVIRSGI 198
           EA+   + E +  +  T LT+H +K+ LQ++     SG+
Sbjct: 410 EAKPTAVKETMQAMGVTSLTTHNIKSHLQKYRESFSSGV 448


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,195,658
Number of Sequences: 37544
Number of extensions: 277527
Number of successful extensions: 701
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)