Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331G06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical pr...    33   0.094
U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z82280-6|CAB05267.2|  460|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF040661-9|AAG24214.1|  345|Caenorhabditis elegans Hypothetical ...    27   6.2  
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF039042-9|AAC48245.1|  431|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical
           protein R07E4.5 protein.
          Length = 817

 Score = 33.5 bits (73), Expect = 0.094
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 375 HKYHSVRPLHK---YHSVRPLHKYHSVRPLHKYHXVRPLHKYHSVRPLH 512
           H +H   P H+   +H+  P+H +   R  H  H     + +H+ RP H
Sbjct: 769 HPHHQQMPHHQPHLHHAHHPVHPHRGPRASHSQHLQHGQYAHHTQRPRH 817



 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 378 KYHSVRPLHKYHSVRPLHK---YHSVRPLHKYHXVRPLHKYHSVRPLHKYH 521
           ++H  +P H +H   P H+   +H+  P+H +   R  H  H     + +H
Sbjct: 762 RHHYTQP-HPHHQQMPHHQPHLHHAHHPVHPHRGPRASHSQHLQHGQYAHH 811


>U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical
           protein K06C4.9 protein.
          Length = 492

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 397 HYISTTVYAHYISTTVYAHYISTTXYAHYISTTVYAHY 510
           H+IS  +   Y ++TV+ + I +T Y   +ST V   Y
Sbjct: 416 HHISNLLLVIYSASTVFIYLIFSTKYRKVLSTCVTCGY 453


>Z82280-6|CAB05267.2|  460|Caenorhabditis elegans Hypothetical
           protein R05A10.6 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 123 HGH*VLDDDSCLGFQNKTSRELRILHEKHNNVT 25
           H H + +DD    F+N+T  E  ++ +K+N  T
Sbjct: 301 HVHVIQNDDFPAKFENRTQLEKELIFKKYNKTT 333


>AF040661-9|AAG24214.1|  345|Caenorhabditis elegans Hypothetical
           protein W10G11.5 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +1

Query: 379 STTVYAHYISTTVYAHYISTTVYAHYISTTXYAHYISTTVYAHYIST 519
           +TTV    I TTV + +I TTV    I TT  +  + TTV    I T
Sbjct: 101 TTTVTTTPIPTTVTSTHIPTTVTTTSIPTTVPSTQLPTTVTTTPIPT 147



 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +1

Query: 376 ISTTVYAHYISTTVYAHYISTTVYAHYISTTXYAHYISTTVYAHYIST 519
           I TTV     +TTV    I TTV + +I TT     I TTV +  + T
Sbjct: 91  ILTTVTTTSTTTTVTTTPIPTTVTSTHIPTTVTTTSIPTTVPSTQLPT 138


>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical
           protein ZC53.4 protein.
          Length = 1410

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 517 YLCSGRTLWYLCSGRTLWYLCSGRTLW 437
           Y+  G TL+Y+  GR++W + S +T +
Sbjct: 107 YVTIGVTLFYIFIGRSIWMVLSPKTFF 133



 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 490 YLCSGRTLWYLCSGRTLWYLCSGRTLW 410
           Y+  G TL+Y+  GR++W + S +T +
Sbjct: 107 YVTIGVTLFYIFIGRSIWMVLSPKTFF 133



 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 463 YLCSGRTLWYLCSGRTLWYLCSGRTLW 383
           Y+  G TL+Y+  GR++W + S +T +
Sbjct: 107 YVTIGVTLFYIFIGRSIWMVLSPKTFF 133


>AF039042-9|AAC48245.1|  431|Caenorhabditis elegans Hypothetical
           protein ZK697.2 protein.
          Length = 431

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 69  KFCFGSPNMSHHRELNDRDVNNADVTLFKNIPSAFLLRHQKWDHMPPPL 215
           K+    P  S   E+  +D N  D+T++KN+    ++R Q W ++  PL
Sbjct: 282 KYLKMDPMPSTELEVVPQDCNLEDITIYKNV--VLMIRRQ-WKNVNEPL 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,227,413
Number of Sequences: 27780
Number of extensions: 242493
Number of successful extensions: 636
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)