Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331G04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 64 9e-12
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 47 2e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 45 8e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 44 2e-05
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 40 2e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 39 4e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 5e-04
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 37 0.002
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 36 0.003
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 36 0.004
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.005
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 36 0.005
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 35 0.008
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 34 0.011
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.026
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 32 0.045
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.079
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 31 0.079
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.18
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 30 0.18
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 30 0.18
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 30 0.18
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 29 0.32
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 29 0.42
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 0.97
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 28 0.97
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 28 0.97
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 1.3
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 27 1.3
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 27 1.7
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 26 3.9
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 3.9
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 5.2
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 6.8
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 25 6.8
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 9.0
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 9.0
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 9.0
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 64.5 bits (150), Expect = 9e-12
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 14/135 (10%)
Frame = +1
Query: 85 FSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNP 249
FS GK+ SCK+ + +GYGFV + + A A + NG+L+ +K + V H +
Sbjct: 188 FSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRR 247
Query: 250 ELKPPTKP-EADW-NLYICNLPNELTLQDLHGLFAQFGRIINSRIA-------AGIAFVL 402
E + + +A++ N+YI NL E+T Q+ LF QFG I + + G FV
Sbjct: 248 ERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVN 307
Query: 403 YEHQYEAERAIQNIN 447
Y + A++A+ +N
Sbjct: 308 YANHECAQKAVDELN 322
Score = 44.8 bits (101), Expect = 8e-06
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 24/165 (14%)
Frame = +1
Query: 25 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKA 189
T + + + +T+ LF G++ S L+ + RG+GFV Y + A KA
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 190 FNGLLMQNKTLKVSHALLNPELKPPTKPEADW------------NLYICNLPNELTLQDL 333
N + K L V A E + + + NL+I NL +E+ + L
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERL 380
Query: 334 HGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAERAIQNIN 447
F+ FG I +++I + G FV Y EA +A+ +N
Sbjct: 381 KAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 46.8 bits (106), Expect = 2e-06
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Frame = +1
Query: 10 PEESPTKLIVNYIPE--VMTQDMMFSLFSTMGKLESCKLIA------NRGYGFVEYTRPD 165
P P L V + + V + LFS G+++SC L + ++GYGFV ++ P
Sbjct: 414 PTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPF 473
Query: 166 DAVKARKAFNGLLMQNKTLKVSHA 237
+AV+A NG+L K L V++A
Sbjct: 474 EAVQAINTLNGVLFGKKRLFVNYA 497
Score = 40.3 bits (90), Expect = 2e-04
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Frame = +1
Query: 259 PPTKPEAD-WNLYICNLPNELT--LQDLHGLFAQFGRIINSRIAA--------GIAFVLY 405
P + P D NL++ NL + + Q L LF++FGRI + +A+ G FV +
Sbjct: 410 PTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSF 469
Query: 406 EHQYEAERAIQNINGSTPPEFLHPLTVKYANKSNPHK 516
H +EA +AI +NG + L V YA K K
Sbjct: 470 SHPFEAVQAINTLNGVLFGK--KRLFVNYAEKREDRK 504
Score = 35.9 bits (79), Expect = 0.004
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 13/85 (15%)
Frame = +1
Query: 241 LNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFG-------------RIINSRIA 381
L+ + K TK + + ++Y+ NLP+ DLH LF FG + +S+
Sbjct: 7 LSEKNKRSTK-KCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSP 65
Query: 382 AGIAFVLYEHQYEAERAIQNINGST 456
AF+ +E++ A+ AI ++NGS+
Sbjct: 66 TLFAFITFENKCSADNAIASLNGSS 90
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 44.8 bits (101), Expect = 8e-06
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 24/169 (14%)
Frame = +1
Query: 19 SPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN------RGYGFVEYTRPDDAVKA 180
S + L V + QD + + FS +G ++ ++ N RGYGFV ++ +DA +A
Sbjct: 3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
Query: 181 RKAFNGLLMQNKTLKVSHAL----------LNPELKPPTKPEADWNLYICNLPNELTL-Q 327
K + + L++ A N +K + + L I NLP + Q
Sbjct: 63 AKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQ 122
Query: 328 DLHGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAERAIQNINGS 453
L F++FG++ +I G AFV + + AE A+ ++NG+
Sbjct: 123 HLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGT 171
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 43.6 bits (98), Expect = 2e-05
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Frame = +1
Query: 133 GYGFVEYTRPDDAVKARKAFNGLLMQNKTL--KVSH----ALLNPELKPPTKPEADWNLY 294
G+GFVE+ AV A A NG ++ L K+SH A + +KP+ +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGT-KIL 724
Query: 295 ICNLPNELTLQDLHGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAERAIQNINGS 453
I NLP E T +D+ L +G++ + R+ A G AF + EA A++ + +
Sbjct: 725 IKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNT 784
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 40.3 bits (90), Expect = 2e-04
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Frame = +1
Query: 259 PPTKPEADWN--LYICNLPNELTLQDLHGLFAQFG-----RIINSRIAAGIAFVLYEHQY 417
PP+ + N L+I NL ++T ++++ LF ++G R+ N+ G AFV+YE+
Sbjct: 2 PPSTVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQ 61
Query: 418 EAERAIQNING 450
+A RA + ++G
Sbjct: 62 DARRACEKLSG 72
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 39.1 bits (87), Expect = 4e-04
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = +1
Query: 31 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIA------NRGYGFVEYTRPDDAVKARKAF 192
L V + ++ + +++ FS +G+L +A ++GYGFV Y + A A +A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 193 NGLLMQNKTLKVSHA 237
N + NK + VS+A
Sbjct: 161 NNQFLMNKPITVSYA 175
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.7 bits (86), Expect = 5e-04
Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 30/166 (18%)
Frame = +1
Query: 46 IPEVMTQDMMFSLFSTMGKLESCKLIAN------RGYGFVEYTRPDDAVKARKAFNGLLM 207
+P D+ + S S K+I + R YGFV ++ + A G L
Sbjct: 190 LPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLC 249
Query: 208 QNKTLKVSHAL--------------LNPELKPPTKPEADW--------NLYICNLPNELT 321
Q + L++S A + P +P D +++ L + L+
Sbjct: 250 QGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLS 309
Query: 322 LQDLHGLFAQFGRIINSRI--AAGIAFVLYEHQYEAERAIQNINGS 453
+DL F FGRI+N +I G FV Y + AE+AI + G+
Sbjct: 310 EKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGA 355
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 36.7 bits (81), Expect = 0.002
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Frame = +1
Query: 40 NYIPEVMTQDMMFSLFSTMGKLESCKL-----IANRGYGFVEYTRPDDAVKARKAFNGLL 204
N P V T+ ++++ F G++ S L +R Y FVE+ P+DA +A + N +
Sbjct: 12 NLAPSV-TESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMNYSI 70
Query: 205 MQNKTLKVSHA 237
+ ++ ++VS A
Sbjct: 71 LCDRCIRVSPA 81
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +1
Query: 289 LYICNLPNELTLQDLHGLFAQFGRIIN-------SRIAAGIAFVLYEHQYEAERAIQNIN 447
+++ NL +T L+ F FG II+ + AFV ++ +A+ A++N+N
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 448 GS 453
S
Sbjct: 68 YS 69
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 36.3 bits (80), Expect = 0.003
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Frame = +1
Query: 127 NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKV-----SHALLNPELKP--PTKPEADW 285
+RG G V + +A+ A + + +TL+V +H + + P P +D
Sbjct: 222 SRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKIEDLVYHAYPHGPCSDC 281
Query: 286 NLYICNLPNELTLQDLHGLFAQFGRIINSRIA-------AGIAFVLYEHQYEAERAIQNI 444
+Y+ NLP + ++L LF G +I +RIA G V +E++ +A +I+ +
Sbjct: 282 -IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKL 340
Query: 445 NGSTPPEFLHPLTVKYANKSNP 510
NG PL + YA+ + P
Sbjct: 341 NGYRYGG--RPLQLSYAHYATP 360
Score = 28.3 bits (60), Expect = 0.73
Identities = 15/74 (20%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +1
Query: 31 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLI-----ANRGYGFVEYTRPDDAVKARKAFN 195
+ V +P + + LF+ +G + ++ ++G+G V++ +DA + + N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 196 GLLMQNKTLKVSHA 237
G + L++S+A
Sbjct: 342 GYRYGGRPLQLSYA 355
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 35.9 bits (79), Expect = 0.004
Identities = 42/166 (25%), Positives = 66/166 (39%), Gaps = 14/166 (8%)
Frame = +1
Query: 61 TQDMMFSLFST-MGKLESCKLIAN------RGYGFVEYTRPDDAVKARKAFNGLLMQNKT 219
T D L++ GK+ S K I + +GYGF + A+ A Q
Sbjct: 307 TSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISAMTLCGYQCSF 366
Query: 220 LKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRI------- 378
K S + L+ NLYI NLP D+ LF +II++R+
Sbjct: 367 AKESFSARLQSLQDTEST----NLYISNLPLHWNESDISTLFKP-SKIISNRVLRDSKEQ 421
Query: 379 AAGIAFVLYEHQYEAERAIQNINGSTPPEFLHPLTVKYANKSNPHK 516
+ G+ F + + AE I N L PL +++A+ ++ K
Sbjct: 422 SRGVGFARMQDRKTAEDIINKFNNFVLDPALPPLQIRFADSTDQKK 467
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.5 bits (78), Expect = 0.005
Identities = 40/180 (22%), Positives = 80/180 (44%), Gaps = 17/180 (9%)
Frame = +1
Query: 25 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARK 186
T L + + +T+ + +++T+GK KLI NR GY FVE+ P +A A
Sbjct: 93 TTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMS 152
Query: 187 AFNGLLM-QNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFA----- 348
N + N K++ A + +++++++ +L + D++ LFA
Sbjct: 153 MNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 349 -QFGRII---NSRIAAGIAFVLYEHQYEAERAIQNINGSTPPEFLHPLTVKYAN-KSNPH 513
+ +I+ + ++ G FV + + + + A+ + G + P+ V A KS H
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGD--RPIRVGLATPKSKAH 270
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.5 bits (78), Expect = 0.005
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 40 NYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKA 180
++I + +T + + + G++ES K + NR GFV YT +A+KA
Sbjct: 505 SHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKA 551
Score = 29.5 bits (63), Expect = 0.32
Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +1
Query: 277 ADWNLYICNLPNELTLQDLHGLFAQFGRIINSRIAA--GIAFVLYEHQYEAERAIQNIN 447
A N++I NLP+ +++ F +FG+I + +I + IAFV + + +A + ++ ++
Sbjct: 297 ASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355
Score = 27.9 bits (59), Expect = 0.97
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = +1
Query: 31 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVK 177
+ + +P + + F GK+E K+++ + FV + DA+K
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIK 349
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 277 ADWNLYICNLPNELTLQDLHGLFAQFGRIINSRIA--AGIAFVLYEHQYEAERAIQNI 444
A N+Y ++ + LT ++L + Q+G I + + FV Y + A +A+ +
Sbjct: 498 ASRNVYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAVNGL 555
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 34.7 bits (76), Expect = 0.008
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Frame = +1
Query: 22 PTKLIVNYIPE--VMTQDMMFSLFSTMGKLESCKLIA------NRGYGFVEYTRPDDAVK 177
P+ L V + + + + + LFS G + S L ++GYGFV + + + AV+
Sbjct: 381 PSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVR 440
Query: 178 ARKAFNGLLMQNKTLKVSHA 237
A+ NG+++ K + V A
Sbjct: 441 AKDTLNGMMVGKKRIFVCFA 460
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = +1
Query: 136 YGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNP 249
YGFV++ + + K G+ + + L + ++NP
Sbjct: 72 YGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNP 109
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 34.3 bits (75), Expect = 0.011
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Frame = +1
Query: 97 GKLESCKLIANRGYGFVEYTRPDDAVKARKAFN--GLLMQNKTLKVS---HA-LLNPELK 258
G L + + + + FV + P A + + N GL+++N+ LK+ H+ L +
Sbjct: 346 GLLHNIRYLQEKHICFVTFVDPVSAFRFFEMSNIHGLVIRNRRLKIGWGKHSGPLPSNIA 405
Query: 259 PPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRI--INSRIAAGIAFVLYEHQYEAERA 432
A N+YI N + LT++ L F +FG I +N AFV + A A
Sbjct: 406 LAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINA 465
Query: 433 IQNI 444
I I
Sbjct: 466 IDRI 469
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +1
Query: 46 IPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKA 180
+P +T+D + G ++ K++ R FV + A+KA
Sbjct: 213 LPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKA 257
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 33.1 bits (72), Expect = 0.026
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +1
Query: 28 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR-----GYGFVEYTRPDDAVKARKAF 192
+L V + + + ++ FS L K++ +R G+GFV + D +KA +
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 193 NGLLMQNKTLKVSHALLNPELKP 261
NG + ++ +K+S A ++KP
Sbjct: 91 NGKYIGSRPVKLSRA--TSDVKP 111
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 32.3 bits (70), Expect = 0.045
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Frame = +1
Query: 7 GPEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLI------ANRGYGFVEYTRPDD 168
G E L V+ I M +D + +FS G + +++ A+RG+GF+ ++ ++
Sbjct: 95 GSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEE 154
Query: 169 AVKARKAFNGLLMQNKTLKVSHA 237
A A N + L V A
Sbjct: 155 ATSAIDNLNSQEFYGRVLNVQKA 177
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.5 bits (68), Expect = 0.079
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Frame = +1
Query: 31 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKAF 192
+IV + T++ + LF+ G +++ L +R GY +EY + A KA
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 193 NGLLMQNKTLKVSHALLNPELKPP 264
N L+ K L+V A L P + P
Sbjct: 72 NLSLLDEK-LEVDFAFLEPPERAP 94
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 31.5 bits (68), Expect = 0.079
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 376 IAAGIAFVLYEHQYEAERAIQNINGST 456
+ +GIAFV + +Q + ++AI+ +NG T
Sbjct: 87 VPSGIAFVTFNNQEDVDKAIETLNGKT 113
Score = 29.1 bits (62), Expect = 0.42
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 130 RGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNPE 252
RG+GFV + +D +A + NG + + TL V A+ +
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRED 298
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 30.3 bits (65), Expect = 0.18
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Frame = +1
Query: 10 PEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESC------KLIANRGYGFVEYTRPDDA 171
PEE ++V + +T++ + +F G ++ K N+GY ++EY D A
Sbjct: 94 PEEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQA 153
Query: 172 VKARKAFNGLLMQNKTLKVS 231
A N + + L VS
Sbjct: 154 ANAVDKMNNAELDGEELFVS 173
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 30.3 bits (65), Expect = 0.18
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +1
Query: 85 FSTMGKLESCKLIAN---RGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNPEL 255
F G L K++ + R Y FV++ DDA KA ++ + +++ A +N +
Sbjct: 103 FQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERAKVNRTI 162
Query: 256 KPPTKP 273
+ + P
Sbjct: 163 RISSAP 168
Score = 27.1 bits (57), Expect = 1.7
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Frame = +1
Query: 10 PEESPTKLIVNYIPEV-MTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARK 186
P P + V + V T ++ LFS GK+ CK+I + R D A
Sbjct: 360 PPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYA 419
Query: 187 AFNGLLM---QNKTLKVSHALLNP 249
A G Q K L+V L P
Sbjct: 420 AVCGKTRSPHQKKPLRVEFRQLRP 443
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 30.3 bits (65), Expect = 0.18
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Frame = +1
Query: 1 EYGPEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN------RGYGFVEYTRP 162
E G + PT ++V IP + +D + F +G + RG F + RP
Sbjct: 194 EPGEDTIPTAIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRP 253
Query: 163 DDAVKARKAFNGLLMQNKTLKV 228
++A + NG + + L+V
Sbjct: 254 EEAQVVVQTLNGYEINGRRLRV 275
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.3 bits (65), Expect = 0.18
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +1
Query: 31 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFNGLLMQ 210
L + I + + ++ S+F G ++S L N +GF++ R D A KA+ A +
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKAQVAMENVPFA 467
Query: 211 NKTLK 225
+ T++
Sbjct: 468 DTTIR 472
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 29.5 bits (63), Expect = 0.32
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +1
Query: 28 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKAF 192
+L V+ I +T + + ++F G +E L + +G+G+++Y P A A +
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 193 NGLLMQNKTLKV 228
NG + + ++V
Sbjct: 401 NGFDLAGRNMRV 412
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 29.1 bits (62), Expect = 0.42
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Frame = +1
Query: 25 TKLIVNYIPEVMTQDMMFSLF-STMGKLESCKLI-----ANRGYGFVEYTRPDDAVKARK 186
+K+IV+ +P +T+ + LF ++G + L ++G + ++RP DA +A +
Sbjct: 55 SKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGDATRAYE 114
Query: 187 AFNGLLMQNKTLKVSHALLNP 249
+ G L+ +L+P
Sbjct: 115 QYEGRLVDGTRKMKVEIILDP 135
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 0.97
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 7 GPEESPTKLIVNYI-PEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKAR 183
G S ++L + ++ + +++ ++ +F G L L AN YGFV++ +D +A
Sbjct: 357 GQFPSASRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKAN--YGFVQFFTNEDCARAL 414
Query: 184 KAFNGLLMQNKTL 222
A G ++ + L
Sbjct: 415 NAEQGNFVRGQKL 427
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 27.9 bits (59), Expect = 0.97
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 280 DWNLYICNLPNELTLQDLHGLFAQFGRIINSR 375
D NLY+ N P D+ LF+ +G +++ R
Sbjct: 665 DTNLYVTNFPPTYDELDITKLFSAYGNVVDVR 696
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 27.9 bits (59), Expect = 0.97
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +1
Query: 85 FSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKAFNGLLMQNKTLKV 228
F+ G +E +++ N+ GY FV + R D A KA GL++ + + V
Sbjct: 120 FTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVV 173
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +1
Query: 58 MTQDMMFSL-FSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKAFNGLLMQNK 216
+TQD L FS GK+ SC++I ++ Y F+E+ + KA +L+ +
Sbjct: 254 VTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDS 313
Query: 217 TLKV 228
+ V
Sbjct: 314 RIHV 317
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 289 LYICNLPNELTLQDLHGLFAQFGRIINSRI 378
L++C L +DL +F++FG+II+ ++
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQV 275
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Frame = +1
Query: 289 LYICNLPNELTLQDLHGLFAQFGRIINSRI--------AAGIAFVLYEHQYEAERAIQNI 444
+YI NL +L D+ +F++FG ++ + + G AF+ YE Q A+ N+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +1
Query: 178 ARKAFNGLLMQNKTLKVSHALLNPE-LKPPTK----PEADWNLYICNLPNEL 318
ARKA + + NK + + A L PE + T P + +Y N+PNEL
Sbjct: 300 ARKALQSIDLSNKKVCMIAATLRPETMYGQTNCYVGPNITYGIYESNVPNEL 351
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 22 PTKLI-VNYIPEVMTQDMMFSLFSTMGKLES 111
P++ + VN+ ++Q+ ++S+F T GKL S
Sbjct: 161 PSRTVDVNFEGPPLSQERLYSIFRTYGKLRS 191
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 127 NRGYGFVEYTRPDDAVKARKAFNG 198
++GYG+V++ P +A KA A NG
Sbjct: 303 SKGYGYVDFETP-EAAKAAVAANG 325
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 289 LYICNLPNELTLQDLHGLFAQFGRI 363
LY+ NLP + +H LF+ +G +
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNV 26
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 163 DDAVKARKAFNGLLMQNKTLKVSHALLNPELKP 261
D+ V AR A+ ++ KTLK H +++ ++KP
Sbjct: 413 DEGVLARTAY-AVVQGLKTLKEEHNIIHRDVKP 444
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +2
Query: 224 KCHTHYLIQNLSHQQNLKPTGISTFVTYLMN*PCKIYMDYLH 349
+C+T +L +S Q N P ++ + +++ P + + Y H
Sbjct: 134 RCYTRFLGNLISAQSNYLPLVMTMLIQHMLYRPDSLAIHYEH 175
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -1
Query: 116 LQLSNLPIVENKENIISWVMTSGM 45
L LS P+++ EN+ W++ M
Sbjct: 13 LYLSKSPLIKKPENLPEWILPEAM 36
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 289 LYICNLPNELTLQDLHGLFAQFGRIINSRIAAG 387
LY+ NLP L +H LF + N A G
Sbjct: 1147 LYLRNLPTNLLDTSMHKLFELLPNVPNDSAALG 1179
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 274 EADWNLYICNLPNELTLQDLHGLFAQFGRIINSRI 378
E + +Y+ L + + DL F++FG + N I
Sbjct: 2 ELEKRIYVGGLSSSIESSDLESRFSRFGSVSNLEI 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,867
Number of Sequences: 5004
Number of extensions: 41159
Number of successful extensions: 169
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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